CN187557

Overview
NameCN187557
Unique NameCN187557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQ 419
            ASG+ V DD    F ++K         AK+  + +VF + E +K +++E   E           D Y+ F   LP ++CRYA+YD  + T E  +K  ++F+ W+P+ + ++SKMIYASSKD  K+   GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNDMKVRHQLSPEEAKKRKKAVVFCLSEDKKMIILEPGKEILQGDVGCNVDDPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 45/136 (33.09%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQ 419
            ASG+ V DD    F ++K         AK+  + ++F + + +K +++E   E           D Y+ F   LP ++CRYA+YD  + T E  +K  ++F+ W+P+ + ++SKMIYASSKD  ++   GI+ E Q
Sbjct:    2 ASGVMVSDDVVKVFNDMKVRHQLSPEEAKKRKKAVIFCLSDDKKTIILEPGKEILQGDVGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF2_CAEEL (Actin-depolymerizing factor 2, isoform c OS=Caenorhabditis elegans GN=unc-60 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASL-----PADECRYAVYDFDFVTDENCQK-----SKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQ--VELQATDPTEM 440
            ASG+ VD  CK  +  L  K  + +I+FKI++    +VVEK+GE +  Y  F   +        ECRYA  D +        +     +K+IF+ + PD + VR +M+YASS    K  L G++   ++QA++ +++
Sbjct:    2 ASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 137          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF1_CAEEL (Actin-depolymerizing factor 1, isoforms a/b OS=Caenorhabditis elegans GN=unc-60 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLEL-KAKRTYRFIVFKIEEK----QKQVVVEKLGEPSDSYENFTASL-------------PADECRYAVYDFDFVTDE----NCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKREL-DGIQVELQATDPTEM 440
            +SG+ VD D +  F +L + ++ YR+I+FKI+E     +  V  ++LG   D Y++ + +                 +CRYAV+DF F          +  KIIF+   PD + ++ KM+YASS    K  L  G  ++ Q +D +EM
Sbjct:    2 SSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENKVIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149          
The following BLAST results are available for this feature:
BLAST of CN187557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COF1_XENTR4.190e-1535.29Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]
COF1B_XENLA1.592e-1433.09Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
ADF2_CAEEL1.946e-1232.12Actin-depolymerizing factor 2, isoform c OS=Caenor... [more]
ADF1_CAEEL3.670e-1131.08Actin-depolymerizing factor 1, isoforms a/b OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187557 ID=CN187557; Name=CN187557; organism=Citrus sinensis; type=EST; length=806bp
AGGGATTTTCTCTCAATTTCCCTCATTTTCTCTCCCCTTTTTTTCTCCAG
AAAATGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTGCAAGCT
GAAGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAGTTTTCA
AGATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGTGAACCA
TCTGATAGTTATGAGAATTTCACTGCTAGCCTCCCAGCGGATGAGTGCCG
ATACGCTGTCTACGATTTTGACTTTGTGACTGATGAGAACTGCCAGAAGA
GCAAGATTATTTTCATTGCATGGTCCCCCGACACCTCAAAGGTGAGAAGC
AAGATGATTTATGCTAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGG
AATTCAGGTAGAGTTGCAGGCTACTGATCCTACTGAGATGGGTCTTGATG
TCATGAGAAGCCGCACAAATTAAATTTTAGACTTGCCTATGGTGCAATGG
AAAGCCCATACTATATTGTTCACTTAAATGTAATGTCTATATCTTTTATG
ACTTATAACTTGCTTTGCTATCAGCTTGTGGTCGGAGTTAAATACTTTTT
TAAGTTGTCTTCTCATTTGTTATATCTGTGGATTAATAGGGTGAGTATCC
CCATATGGTGTGATGATAATTACAGACTAATATATAATGGTTTGTGGGGG
GTACATATCTCATTTTAGCTTTGATTGCTTGCAACTGGGTTATTTGCAGT
AGTATCAGTGTAATACCTCAGTTACATGATTTGTTAAAAAAAAAAAATAA
AAAAAA
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