CN187556

Overview
NameCN187556
Unique NameCN187556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.982e-34
Identity = 62/116 (53.45%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  345 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 692
            ++ +R+++FK+          K G P +SY++FTASLPAD+CRYAVYD DFV+D+NC+KSKI FI+WSP  S++R+K IYA S+++F+ ELDG+  E+QATDP +M L+V+R R N
Sbjct:   34 RKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 64/116 (55.17%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  345 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 692
            K+ +R+++FK+          K G  ++SY++F ASLP ++CRYA+YDFDFVT EN QKSKI FIAWSP TS++R+KM+Y++SKDR K+ELDG   E+QATDPTE+ L+V+R R +
Sbjct:   30 KKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 59/116 (50.86%), Postives = 91/116 (78.45%), Query Frame = -1
Query:  345 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 692
            K+++R+++FK+          K G  ++S+++F  SLP  +CRYA+YDFDFVT+ENCQKSKI F+AWSP  S++R+KM+YA+SK+RF+RELDG+  E+QATDP+E+ ++++R R +
Sbjct:   30 KKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.535e-32
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = -1
Query:  351 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 692
            K+ +R+IVFK+          K+G   +SY +   SLP D+CRYAV+DFDFVT +NC+KSKI FIAWSP+ SK+R+K++YA+SKD  +R L+GI  ELQATDPTEMG D+++ R
Sbjct:   28 KKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDR 141          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = -1
Query:  351 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 692
            K+ +RF+V+K+          K+G P + YE   A+LP D+CRYAV+DFDFVT +NCQKSKI FIAWSP  S++R+K++YA+SK   +R LDG+  E+QATD +EMG DV+R R
Sbjct:   28 KKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGR 141          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = -1
Query:  351 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 695
            +KR +RFI F M          K+G+ + SYE+FT+SLP  +CR+A+YDFDF+T E+  KS+I +I WSPD +KVRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD ++ R
Sbjct:   23 SKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = -1
Query:  351 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 695
            +KR +RFI FKM          ++G+ + SY++FT SLP ++CRYA+YDFDFVT E+ QKS+I +I WSP ++KV+SKM+YASS  +FK  L+GIQVELQATD +E+ LD ++ R
Sbjct:   23 SKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDR 137          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = -1
Query:  351 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 692
            K+ +R++V+K+          K+G   +SY++  ASLP D+CRYAV+DFD+VT +NC+ SKI FI WSP+ S++R KM+YA+SK   +R LDG+  ELQATDPTEMG D ++ R
Sbjct:   15 KKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDR 128          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = -1
Query:  345 KRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 692
            ++ +R+++FK+          K G P +SY++FTASLPAD    AVYD DFV+D+NC+KSKI FI+WSP  S +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V+R R N
Sbjct:   33 RKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 65/121 (53.72%), Postives = 78/121 (64.46%), Query Frame = -1
Query:  345 KRTYRFIVFKMXXXXXXXXXXKL-----GEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 692
            +RT+R IV+K+                 GE   SYE F  SLPADECRYA+ D +FV  E     KI FIAWSP T+K+R KMIY+S+KDRFKRELDGIQVE  ATD T++ LD +R R N
Sbjct:   17 RRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
The following BLAST results are available for this feature:
BLAST of CN187556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF10_ORYSJ6.982e-3453.45Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF2_ORYSJ1.556e-3355.17Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF11_ORYSJ1.556e-3350.86Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF5_ARATH8.535e-3255.26Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF5_ORYSJ3.243e-3153.51Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF4_ORYSJ1.233e-3053.91Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_MAIZE2.746e-3053.91Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF9_ARATH6.117e-3050.88Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF8_ORYSJ1.275e-2750.00Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF11_ARATH8.267e-2753.72Putative actin-depolymerizing factor 11 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187556 ID=CN187556; Name=CN187556; organism=Citrus sinensis; type=EST; length=695bp
GTTTTTTTTTTATTTTTTTTTTTTTTTTAACAAATCATGTAACTCGCTTT
ATTACACTGATACTACTGCAAATAACCCAGTTGCAAGCTTTCAAAGCTAA
AATGAGATATGTACCCCCCACAAACCATTATATATTAGTCTGTAATTATC
ATCACACCATATGGGGATACTCACCCTATTAATCCACAGATATAACAAAT
GAGAAGACAACTTAAAAAAGTATTTAACTCCGACCACAAGCTGATAGCAA
AGCAAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAAT
ATAGTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTTGT
GCGGCTTCTCATGACATCAAGACCCATCTCAGTAGGATCAGTAGCCTGCA
ACTCTACCTGAATTCCATCCAATTCTCTCTTGAACCTGTCCTTGGAGCTA
GCATAAATCATCTTGCTTCTCACCTTTGAGGTGTCGGGGGACCATGCAAT
GAAAATAATCTTGCTCTTCTGGCAGTTCTCATCAGTCACAAAGTCAAAAT
CGTAGACAGCGTATCGGCACTCATCCGCTGGGAGGCTAGCAGTGAAATTC
TCATAACTATCAGATGGTTCACCAAGCTTCTCCACAACAACCTGCTTCTG
CTTCTCTTTCATCTTGAAAACTATGAAGCGGTAAGTCCTTTTTGC
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