CN187556

Overview
NameCN187556
Unique NameCN187556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -1 
Query:  393 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 611
            D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -1 
Query:  351 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 611
            D Y  F   LP D+CRY +YD  + T E+ +K  ++FI W+PD + ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R
Sbjct:   66 DPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -1 
Query:  351 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 611
            D Y  F   LP D+CRY +YD  + T E+ +K  ++FI W+PD + ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R
Sbjct:   66 DPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146
[Close]
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -1 
Query:  348 DSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRT 611
            D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147
The following BLAST results are available for this feature:
BLAST of CN187556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COF1_RAT1.369e-1349.32Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN1.369e-1349.32Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF1_MOUSE1.788e-1349.32Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
COF1_SHEEP2.335e-1349.32Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG2.335e-1349.32Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA2.335e-1349.32Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN2.335e-1349.32Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF2_XENTR3.050e-1343.68Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
COF2_XENLA3.050e-1343.68Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF2_PIG5.202e-1342.05Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187556 ID=CN187556; Name=CN187556; organism=Citrus sinensis; type=EST; length=695bp
GTTTTTTTTTTATTTTTTTTTTTTTTTTAACAAATCATGTAACTCGCTTT
ATTACACTGATACTACTGCAAATAACCCAGTTGCAAGCTTTCAAAGCTAA
AATGAGATATGTACCCCCCACAAACCATTATATATTAGTCTGTAATTATC
ATCACACCATATGGGGATACTCACCCTATTAATCCACAGATATAACAAAT
GAGAAGACAACTTAAAAAAGTATTTAACTCCGACCACAAGCTGATAGCAA
AGCAAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAAT
ATAGTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTTGT
GCGGCTTCTCATGACATCAAGACCCATCTCAGTAGGATCAGTAGCCTGCA
ACTCTACCTGAATTCCATCCAATTCTCTCTTGAACCTGTCCTTGGAGCTA
GCATAAATCATCTTGCTTCTCACCTTTGAGGTGTCGGGGGACCATGCAAT
GAAAATAATCTTGCTCTTCTGGCAGTTCTCATCAGTCACAAAGTCAAAAT
CGTAGACAGCGTATCGGCACTCATCCGCTGGGAGGCTAGCAGTGAAATTC
TCATAACTATCAGATGGTTCACCAAGCTTCTCCACAACAACCTGCTTCTG
CTTCTCTTTCATCTTGAAAACTATGAAGCGGTAAGTCCTTTTTGC
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