CN187554

Overview
NameCN187554
Unique NameCN187554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.940e-27
Identity = 68/151 (45.03%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   84 RKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQE---EKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            R  NV DP S+D W   D F +     V S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   + +++WH VERSSGKF RRFRLP  A+++QV ASM+NG                 AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  204 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENG
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.434e-23
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  198 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENG
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   78 GGRKTNVFDPFSLDVWDPF-DGFFSSALTNVPSTARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            GG      +P S+D+ +PF D    +A    PS A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NG
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  117 DVW-----DPFDGFFSSALTNVP-STARETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            D+W     DPF       L  +P    R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  ME VKA +ENG
Sbjct:   40 DLWLDRFPDPF-----KILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  306 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAK++QVKASMENG                 AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 3
Query:   96 VFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            +FD  + D W+PF   F + +      A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A ++ V+ASM+ G
Sbjct:    6 LFDTLAFDAWNPFS-IFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGG 126          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  183 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NG
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNG 164          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   48 PIMSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKMEQVKASMENG 458
            P  +L+P  +G    + F         P  G  ++A    P+        A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A + +V A +++G
Sbjct:   26 PAAALVPYGYGYMLDDPFRVLEQSPLRPAGGVAAAAAAGEPAAV------ALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDG 164          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  198 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKMEQVKASMENG 458
            + A IDW E+  +H+FK ++PG            G +L I GE  KE++++N  WH  ER +      +FLRR  LP+N K++QVKA +ENG
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENG 111          
The following BLAST results are available for this feature:
BLAST of CN187554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS166_ORYSJ1.940e-2745.0316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN8.434e-2355.2922.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA8.434e-2352.8722.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS189_ORYSJ3.205e-2241.8618.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH5.467e-2245.4522.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN5.658e-1964.86Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ5.658e-1940.9817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ1.180e-1643.7523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.225e-1534.4821.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH3.552e-1340.2215.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187554 ID=CN187554; Name=CN187554; organism=Citrus sinensis; type=EST; length=759bp
AGGAAGATTACTTCAACTCTTGGACATTTTCTTAGCTTCAAAATTTTCCA
ATCATGTCACTCATTCCAAGCATCTTCGGCGGCAGAAAAACCAACGTGTT
CGATCCATTCTCACTAGATGTGTGGGATCCTTTTGACGGGTTCTTCTCCT
CTGCCCTTACCAACGTGCCGTCTACGGCTAGGGAAACATCCCAATTTGCC
AATGCAAGAATTGACTGGAAAGAGACTCCTCAGGCTCATGTATTCAAAGC
TGATCTTCCAGGGCTGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGG
GCAGGATTCTGCAGATAAGCGGAGAGAGGAGCAAGGAGCAAGAAGAGAAG
AATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAG
GTTCAGGTTGCCCGACAATGCTAAGATGGAGCAGGTTAAGGCCAGCATGG
AGAATGGTGTGCTCACAGTCACTGTTCCTAAAGAGGAGGAGAAGAAACCT
GAAGTTAAGGCCATTGAGATCTCCGGCTAAGTGATAAGTGTAAATGTTTT
CAAGATTGTGTCTATGGTTTGCCGATAAATTTGGTACGAAAGCAAAGCCC
TTGTGTCTGTTCCCCCCCCCCCCCTCCTAATTTGATGTAATAATGTTTGT
GTGTTTGCAAGAGTTTCAAGGGCAAGTCTGAAACTTTGTTAACTAGTTTC
TTAAAAGATAAATTGTGTGCAATAAAATGTATTTTATAGTTTGAAAAAAA
AAAAAAAAA
back to top