CN187553

Overview
NameCN187553
Unique NameCN187553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187553 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.306e-14
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = -2
Query:  295 GERSKEQEEKTDKWHCVERSSGKFLRRFRLPDNAKMEQVKASMENG 432
            GER KE+E+K D WH VERS GKF R+FRLP N  ++ VKA +ENG
Sbjct:  106 GERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          

HSP 2 Score: 33.4982 bits (75), Expect = 4.306e-14
Identity = 15/28 (53.57%), Postives = 23/28 (82.14%), Query Frame = -1
Query:  419 PGLRKEEAKVEVEEGRILQIM--RREEQ 496
            PGL++EE KVEVEE R+L++   R++E+
Sbjct:   85 PGLKREEIKVEVEENRVLRVSGERKKEE 112          
BLAST of CN187553 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  226 GERSKEQEEKTDKWHCVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXKAIEISG 432
            GER  E+E+K D WH VERSSG+F RRFRLP+N KM+QVKA+MENG                K+I+ISG
Sbjct:   85 GERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CN187553 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.686e-13
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = -2
Query:  295 GERSKEQEEKTDKWHCVERSSGKFLRRFRLPDNAKMEQVKASMENG 432
            GER KE+++K D WH VERS GKF R+F+LP N  ++ VKA MENG
Sbjct:  114 GERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          

HSP 2 Score: 31.9574 bits (71), Expect = 2.686e-13
Identity = 13/28 (46.43%), Postives = 23/28 (82.14%), Query Frame = -1
Query:  419 PGLRKEEAKVEVEEGRILQIM--RREEQ 496
            PGL+K++ K+EVEE R+L++   R++E+
Sbjct:   93 PGLKKDDIKIEVEENRVLRVSGERKKEE 120          
BLAST of CN187553 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -2
Query:  295 GFCR*CGERSKEQEEKTDKWHCVERSSGKFLRRFRLPDNAKMEQVKASMENG 450
            G  R  GER +E+E+K D+WH VERS GKF R+F+LPDN  ME VKA +ENG
Sbjct:  104 GVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
The following BLAST results are available for this feature:
BLAST of CN187553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HSP41_SOYBN4.306e-1463.0422.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HS17B_ARATH1.964e-1355.0717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP41_PEA2.686e-1360.8722.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH6.319e-1261.5422.0 kDa heat shock protein OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187553 ID=CN187553; Name=CN187553; organism=Citrus sinensis; type=EST; length=496bp
TTTTTTTTTCAACTATAAAATACATTTTATTGCACACCATTTATCTTTTA
AGAAACTAGTTAACAAAGTTTCAGACTTGCCCTTGAAACTCTTGCAAACA
CACAAACATTATTACATCAAATTAGGAGGGGGGGGGGGGGAACAAACCCA
AGGGCATTTGCTTTCATACCAAATTTATCGGCAAACCATAGACACAATCT
TGAAAACCTTTCCACTTATCACTTAGCCGGAAATCTCAATGGCCTTAACT
TCGGGTTTCTTCTCCTCCTCTTTAGGAACAGTGACTGTGAGCACACCATT
CTCCATGCTGGCCTTAACCTGCTCCATCTTAGCATTGTCGGGCAACCTGA
ACCTCCTCAGGAACTTGCCACTGCTCCTCTCAACACAATGCCACTTGTCA
GTCTTCTCTTCTTGCTCCTTGCTCCTCTCTCCGCATTATCTGCAGAATCC
TGCCCTCTTCAACCTCAACTTTCGCTTCTTCTTTCCTCAACCCTGG
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