CK938049

Overview
NameCK938049
Unique NameCK938049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938049 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   73 WCVCKDGVGDPVLQKALDYACG-AGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 318
            WCV K+   D  LQ A+++ACG  GADC PI   GPC +P  V+   S+  N+Y+ + G+   +C+F+ +A + + +PS   C
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTC 123
[Close]
BLAST of CK938049 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   61 STANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 318
            S+ +WC+      +  L+ ALD+ACG G  DC  I  + PC+ P+T+ +H S+  NSYFQ+      +C F G+      DPS   C
Sbjct:  365 SSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKC 451
The following BLAST results are available for this feature:
BLAST of CK938049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L1_ARATH6.812e-1438.55Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH2.191e-1236.78Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004478_H02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938049 ID=CK938049; Name=CK938049; organism=Citrus sinensis; type=EST; length=868bp
GGGGATTCAGTGATGGCTGTTTTGGTGCTTTTAGCTCTCTTCCTTGGCTT
CACTGGGCATTCAACTGCAAACTGGTGTGTTTGCAAAGATGGAGTGGGTG
ACCCAGTTTTACAAAAAGCTTTGGACTATGCTTGTGGAGCTGGGGCTGAT
TGTAACCCTATCCATTCCAATGGGCCTTGTTACAACCCCAACACTGTCAA
AGCTCACTGCAGTTATGCTGTCAACAGCTATTTCCAGAGAAAGGGTCAAG
CTCAAGGCTCTTGTGATTTTTCCGGAAGTGCAACCGTTGCCACTACCGAT
CCCAGCACTGCTGGCTGTTCTTATCCTTCAAGTGCCAGCACTTCAGGCAC
CACCTCAACAACACCAGTCACAGGTACTCCAGGCACAACCACACCCACAA
CAACTCCGTCCACTACCACTCCAACGACTAACACACCAGGCAGCACCACA
CCAGGCAGCACCACTCCGGGCAGCACCACTCCGTACACCACCACACCATC
AACTGGAACTGGAGTGTTGGGAGGAGTTGGTCCTGGTTTAGGCCCTTCGG
GATCTGGTATGCCCAACACAGACTATAGTCATGGTGGGATGAGACTGCAA
AACTCTGCCTTGTCTTTTTTGGTCGTCCTCTTGTTCTCAGGCTCGATGCT
CTTGTGGGTTGAAAGAAACAATCAACGTGACATCTACTAGGATGGAGATG
TGGTACTATAGTCAGTGTCCTTGATGCTGGATCTCAATGTGCAAAGATGG
AGTATGCATGTGATTGTGTTGTTAATTATCTAAAGACACCTTAATTAGCT
GGCTAAGTTTCTTTTTCTTTTCCTCTTCTACTTGTCAAAAAGAGATGATG
AGCTTTTTAGTCCTTTTC
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