CK937947

Overview
NameCK937947
Unique NameCK937947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.766e-26
Identity = 74/192 (38.54%), Postives = 104/192 (54.17%), Query Frame = 3
Query:   66 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 641
            QD CVA N P      +G  C+      A DF+   L +PG            A V+Q P +N LGISA R+D  P G  P H HP  SE+  VL+G L  GF++S   ++ +  K ++KG +FVFPQGL+HFQ+N G T A A++A +S  PG + I D    AN ++   ++ K   L    V+ L++KF
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPG-LQILDYALFAN-NLPTSYVVKGTFLAEAEVRRLKSKF 215          
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.012e-26
Identity = 78/200 (39.00%), Postives = 107/200 (53.50%), Query Frame = 3
Query:   51 DPGHLQDVCVAINDPKD--GVF-VNGKFCKDPKLARAEDFFFSGLGKPGNTANRL-GVDET-DANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIG-KTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 632
            DP  L D CVA        G F +NG  C DP LARA+ F  S L +  N A  L G + T  +    +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L  ++L  G+ FVFP+ ++HF +N+     A   S LNSQ PG   +  + F   P +  + L KAF++  + V+ +Q
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.265e-24
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  150 AEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQN 635
            A DF + GL   GNT+N +    T A V Q PG+N LGISA R+D A  G  P H HP ASE+  V +GT+  GF+TS   ++T+  + L  GD+ VFPQGL+H+Q+N G++ A A  A +   PG + I D    AN ++    + K   LD   VK L++
Sbjct:   50 AGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPG-LQITDYALFAN-NLPSAIVEKVTFLDDAQVKKLKS 207          
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.316e-23
Identity = 67/155 (43.23%), Postives = 84/155 (54.19%), Query Frame = 3
Query:   63 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 527
            + D CVA N P      +G  CK+     A DF +SGL KPGNT N +    T A V Q PG+  LG++  R+D AP G  P H HP ASEI  V+EGT+   F++S    + +  K L  GDV VFPQGL+ FQ   GK  A     L  + PG
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG 173          
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 64/161 (39.75%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  156 DFF-FSGLGKPGNTANRLGVDE---TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD-PKIVK 623
            DFF F+G  K  NT++    +    T A + + P LN   +S   + + P    PPH HPR++E+ LV++G L VGF+ +    + L  + L  GD+FVFP+G++HFQFN G   A A SA  S  PG V +  TVFG    I+   L K+F+ D P I+K
Sbjct:   48 DFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSFKTDVPTILK 203          
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.225e-20
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  219 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 632
            T A + + P LN   +S   + Y P    PPH HPR++E+ L+++G L VGFV +    + L  + L  GD+FVFP+G++HFQFN G   A A SA  S   G V++  TVFG N  I+   L K+F+ D   ++ L+
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CK937947 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  186 GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNSTLIAKVLNKGDVFVFPQGLIHFQFNIG-KTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 632
            GN+ +   +  T A   + P L    +S   + +      PPHIHPRASE+ +V++G L VG V + + N T+  + L  GD+FVFP+G++HFQFN G    A A+SA  S  PG +++   +FG+   I+   L K+   D   V  L+
Sbjct:   58 GNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS--GIDDTILDKSMHTDQATVDQLK 204          
The following BLAST results are available for this feature:
BLAST of CK937947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL813_ORYSJ1.766e-2638.54Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ3.012e-2639.00Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL814_ORYSJ1.265e-2441.98Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI5.316e-2343.23Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL92_ORYSJ2.234e-2139.75Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ3.225e-2039.86Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ2.311e-1836.00Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_A04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937947 ID=CK937947; Name=CK937947; organism=Citrus sinensis; type=EST; length=794bp
GGGTAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCCACT
GACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAAGGA
TGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGAGAG
CAGAAGATTTCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCAAAT
CGACTTGGTGTTGATGAAACAGATGCAAATGTCGAGCAAATTCCAGGGCT
CAACACCCTTGGCATATCAGCATTCCGTATTGACTATGCACCATATGGCC
AAAGGCCACCTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTCCTG
GAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAGCAC
ACTCATCGCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAG
GTTTGATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTAT
TCTGCTCTAAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGT
CTTTGGAGCCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCC
AGTTGGACCCAAAGATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGC
AATTAGGAGAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAG
TGGCTGTATTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAA
AAGAGGTCTCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATG
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