CK937941

Overview
NameCK937941
Unique NameCK937941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 3 
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPT 233
            ++ P+L  +A+ +HV+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K GL + I G+A +   M T
Sbjct:  496 ILFPILSPLAEAIHVNPLHILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFT 571
The following BLAST results are available for this feature:
BLAST of CK937941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
S13A1_RAT8.645e-1136.84Solute carrier family 13 member 1 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004479_H10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937941 ID=CK937941; Name=CK937941; organism=Citrus sinensis; type=EST; length=490bp
GGGCTCTCGTTCTTCCACTTTTGATCCAAATAGCAAAAACTATGCATGTT
CATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTCTTT
CTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCGGGC
ACATCGAAATTCAAGATATGATCAAGACAGGGCTGCCCCTTAAGATTGCT
GGCATTGCTGCTATGGCCTTTCTAATGCCTACACTTGGTGCTTATGTTTT
TGGGACAGATGGGGATGTTCAGTAGCTGCAAACTCTTGTAAACTGTGGAG
GTTTCTCTCAATCAAGTCTCCGTAACAGGCATTGGGGGACCCTGAATAGG
AATTATAGCAATGCTAGTGTTTGCACACCATATTGAGTTTTTCCTATAAG
AAAAGACGCCTATTGTATATTTGCGTGCCTAATGAATGCTTCCCTTAGTG
GTTAGCACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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