CK937864

Overview
NameCK937864
Unique NameCK937864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_RABIT (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_MOUSE (Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_MACFA (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_HUMAN (Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_BOVIN (Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_SCHMA (Dynein light chain OS=Schistosoma mansoni GN=DLC PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 54/86 (62.79%), Postives = 73/86 (84.88%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q++A+ IA  A +K+ +EKD+A  IKKDFD+K+ PTWHCIVG +FGSYVTHET++F+YFYLD +A LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQEDAIHIAAGAIDKHDLEKDIAANIKKDFDRKYHPTWHCIVGRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL2_SCHMA (Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM ED+Q+ AV  A AA +K  +EKDVA  IKK+FD+K+ P WHCIVG +FGSYVTHET HF+YFYL ++A LLFKSG
Sbjct:    4 RKAVIKNADMHEDMQETAVHTAAAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_EMENI (Dynein light chain, cytoplasmic OS=Emericella nidulans GN=nudG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.389e-26
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 3
Query:   18 IKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 260
            IKS DM ED+Q+EAV++AI A EK  +EKD+A+ IK++FD + G TWHC+VG NFGS+VTHET HF+YFYL   A+LLFK+
Sbjct:   13 IKSVDMSEDMQQEAVEVAIEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFKT 93          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_SCHPO (Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe GN=dlc2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.892e-26
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 3
Query:   15 VIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            VIK+ DM E +Q+EA+  A+ A EK ++EKD+A  IK++FDKK  PTWHCIVG NFGS+VTHE+ HF+YFYL   A LLFKSG
Sbjct:    3 VIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTVAFLLFKSG 85          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.437e-23
Identity = 45/82 (54.88%), Postives = 68/82 (82.93%), Query Frame = 3
Query:   18 IKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            +K+ADM + +Q++A +  I AFE+ ++E+D+A  IKK+FDKK+ PTWHCIVG +FGS+VTHET +F+YF +++ +VLLFK+G
Sbjct:   10 VKNADMPDFMQQDATECTIKAFEETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFGSFVTHETKNFIYFNINKHSVLLFKAG 91          
The following BLAST results are available for this feature:
BLAST of CK937864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DYL1_RABIT1.027e-2965.12Dynein light chain 1, cytoplasmic OS=Oryctolagus c... [more]
DYL1_MOUSE1.027e-2965.12Dynein light chain 1, cytoplasmic OS=Mus musculus ... [more]
DYL1_MACFA1.027e-2965.12Dynein light chain 1, cytoplasmic OS=Macaca fascic... [more]
DYL1_HUMAN1.027e-2965.12Dynein light chain 1, cytoplasmic OS=Homo sapiens ... [more]
DYL1_BOVIN1.027e-2965.12Dynein light chain 1, cytoplasmic OS=Bos taurus GN... [more]
DYL1_SCHMA8.698e-2962.79Dynein light chain OS=Schistosoma mansoni GN=DLC P... [more]
DYL2_SCHMA4.317e-2863.95Probable dynein light chain OS=Schistosoma mansoni... [more]
DYL1_EMENI1.389e-2662.96Dynein light chain, cytoplasmic OS=Emericella nidu... [more]
DYL1_SCHPO6.892e-2662.65Dynein light chain 1, cytoplasmic OS=Schizosacchar... [more]
DYL_DICDI1.437e-2354.88Dynein light chain, cytoplasmic OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_A05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937864 ID=CK937864; Name=CK937864; organism=Citrus sinensis; type=EST; length=532bp
GGGGAAAACGAGTCGTTATTAAGAGCGCCGACATGAAAGAGGACCTGCAA
AAGGAGGCTGTTGATATTGCTATTGCAGCATTTGAGAAGAACAGTGTAGA
GAAAGATGTAGCTGAGAGGATAAAGAAGGATTTTGATAAGAAGCATGGAC
CTACTTGGCACTGTATTGTCGGTAGCAATTTTGGTTCATATGTGACTCAC
GAAACAAACCACTTTGTTTATTTCTATTTGGATCAGAAAGCAGTTTTGCT
ATTCAAATCCGGTTAGCCCAATGTCGAGAAAGATGGTGGATTGTGGTTCG
GATGATGAGTTTACGTTCCAAATGCTATAAATATTGTCTGTATGTAGTAA
TTGAAATCTTTACATGGAGATTCTTGAGCCTAAGTTGTATATTTGAATTC
GCTTGGAACTGGTTTGATACTTCAAAATGGATGTGCACTGCAGTTTTTAG
TTGAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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