CK937838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24 Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y+QRVG+GAP GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS Sbjct: 37 YAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y+Q VG+GAP GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKK+ Sbjct: 37 YAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKA 118
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22 Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 YS+RVGTGAP GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A TIA GGVLPNINP+LLP KS Sbjct: 44 YSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKS 125
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 4.485e-22 Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 YS+R+GTGAP GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A TIA GGVLPNINP+LLP KS Sbjct: 44 YSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKS 125
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22 Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y+ R G+GAP GNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLLPKKS Sbjct: 50 YALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22 Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y++R+G GAP GNAARDNKKNRI+PRH+ LA+RNDEELGKLL VTIA GGVLPNI+ VLLPKKS Sbjct: 39 YAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22 Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y++R+G GAP GNAARDNKKNRI+PRH+ LA+RNDEELGKLL VTIA GGVLPNI+ VLLPKKS Sbjct: 39 YAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22 Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 YS+R+GTGAP GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A TIA GGVLPNINP+LLP K+ Sbjct: 44 YSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22 Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 YS+R+GTGAP GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A TIA GGVLPNINP+LLP K+ Sbjct: 44 YSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21 Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ VLLPKKS Sbjct: 43 YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124 The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bpback to top |