CK937838

Overview
NameCK937838
Unique NameCK937838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   37 YAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+Q VG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKK+
Sbjct:   37 YAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKA 118          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVGTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP KS
Sbjct:   44 YSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKS 125          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.485e-22
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP KS
Sbjct:   44 YSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKS 125          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+ R G+GAP                  GNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLLPKKS
Sbjct:   50 YALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKKS
Sbjct:   39 YAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKKS
Sbjct:   39 YAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP K+
Sbjct:   44 YSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP K+
Sbjct:   44 YSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+ VLLPKKS
Sbjct:   43 YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124          
The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A1_WHEAT6.258e-2467.07Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A6_WHEAT6.919e-2364.63Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2AX_TETTH3.434e-2262.20Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AX_TETPY4.485e-2260.98Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A5_ARATH7.650e-2264.63Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A4_VOLCA9.991e-2262.20Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A3_VOLCA9.991e-2262.20Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A1_TETTH9.991e-2259.76Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY9.991e-2259.76Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2AX_PICAB1.305e-2163.41Histone H2AX OS=Picea abies PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bp
GGGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTG
TACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCG
AGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTTTATTGGCTGT
AAGAAACGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTC
ATGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCT
GAGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTC
CCCAAAGAAGGCTTAGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGT
TACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATT
TAGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTT
TTGCTTGGACTGTAGAATGAATGAAATCATGGTACTTGTTCCGAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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