CK937838

Overview
NameCK937838
Unique NameCK937838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.704e-21
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.226e-21
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAQRVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.226e-21
Identity = 53/82 (64.63%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   40 YAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.907e-21
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKK+
Sbjct:   39 YAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++R+G GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKS
Sbjct:   39 YAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKS 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21
Identity = 53/82 (64.63%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG GAP                  GNAARDNKK RI PRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   41 YAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21
Identity = 53/82 (64.63%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+ RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKS
Sbjct:   40 YAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21
Identity = 52/82 (63.41%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKKS
Sbjct:   40 YAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 4.958e-21
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 4.958e-21
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A_ACRFO1.704e-2164.63Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A_SEPOF2.226e-2163.41Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2AL_STRPU2.226e-2164.63Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2A_CHLRE2.907e-2160.98Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A_URECA3.797e-2162.20Histone H2A OS=Urechis caupo PE=3 SV=2[more]
H2A_CAEEL3.797e-2164.63Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2AX_XENLA3.797e-2164.63Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AX_MOUSE3.797e-2163.41Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2A_MYTGA4.958e-2162.20Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED4.958e-2162.20Histone H2A OS=Mytilus edulis PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bp
GGGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTG
TACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCG
AGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTTTATTGGCTGT
AAGAAACGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTC
ATGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCT
GAGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTC
CCCAAAGAAGGCTTAGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGT
TACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATT
TAGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTT
TTGCTTGGACTGTAGAATGAATGAAATCATGGTACTTGTTCCGAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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