CK937838

Overview
NameCK937838
Unique NameCK937838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 52/81 (64.20%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 247
            Y+ RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK
Sbjct:   39 YANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 52/82 (63.41%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y  RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 52/82 (63.41%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y  RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YGSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.443e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+ RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.443e-20
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+ RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.443e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+ RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   39 YANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.461e-20
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++RVG GAP                  GNAARDNKK+RI PRH+ LAVRNDEEL K LAGVT A GGVLPNI+ VLLPKKS
Sbjct:   40 YAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121          
The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A_STRPU1.105e-2063.41Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_PARLI1.105e-2063.41Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2AE_PSAMI1.105e-2063.41Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A4_PSAMI1.105e-2064.20Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A2_PSAMI1.105e-2063.41Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A1_PSAMI1.105e-2063.41Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_PARAN1.443e-2062.20Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_MYTTR1.443e-2062.20Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A3_PSAMI1.443e-2062.20Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A_PLAFA2.461e-2062.20Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bp
GGGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTG
TACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCG
AGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTTTATTGGCTGT
AAGAAACGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTC
ATGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCT
GAGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTC
CCCAAAGAAGGCTTAGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGT
TACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATT
TAGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTT
TTGCTTGGACTGTAGAATGAATGAAATCATGGTACTTGTTCCGAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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