CK937838

Overview
NameCK937838
Unique NameCK937838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.461e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG GAP                  GNAA DNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   26 YAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 2.461e-20
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y++R+G GAP                  GNA+RDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   40 YAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG+GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   39 YAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 120
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A3_LYTPI2.461e-2062.20Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A1A_HUMAN2.461e-2059.76Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2A3_RAT3.214e-2062.20Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE3.214e-2062.20Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN3.214e-2062.20Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A2_PICGU3.214e-2062.20Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A1_MOUSE3.214e-2062.20Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE... [more]
H2A1K_MOUSE3.214e-2062.20Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]
H2A1H_MOUSE3.214e-2062.20Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ... [more]
H2A1F_MOUSE3.214e-2062.20Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bp
GGGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTG
TACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCG
AGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTTTATTGGCTGT
AAGAAACGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTC
ATGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCT
GAGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTC
CCCAAAGAAGGCTTAGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGT
TACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATT
TAGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTT
TTGCTTGGACTGTAGAATGAATGAAATCATGGTACTTGTTCCGAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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