CK937838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20 Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 YS+RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL VTIA GGVLPNI VLLPKK+ Sbjct: 40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20 Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 YS+RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL VTIA GGVLPNI VLLPKK+ Sbjct: 40 YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 50/82 (60.98%), Postives = 56/82 (68.29%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y++RVG GAP GNAARDNKK RI PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 39 YAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 49/81 (60.49%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 247 Y++RVG GAP GNAARDNK NRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 44 YAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 247 Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI VLLPKK Sbjct: 43 YAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 247 Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI VLLPKK Sbjct: 43 YAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y+QRVG+GAP GNAARDNKK+RIIPRH+ LA+RNDEEL KLL VTIA GGVLPNI+ LLPKKS Sbjct: 40 YAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y+QRVG+GAP GNAARDNKK+RIIPRH+ LA+RNDEEL KLL VTIA GGVLPNI+ LLPKKS Sbjct: 40 YAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20 Identity = 50/82 (60.98%), Postives = 57/82 (69.51%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250 Y+QR+G+GAP GNAARDNKK+RIIPRH+ LA+RNDEEL KLL VTIA GGVLPNI+ LLPKKS Sbjct: 40 YAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 121
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.482e-20 Identity = 49/81 (60.49%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 247 Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI+ LLPKK Sbjct: 43 YAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123 The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bpback to top |