CK937823

Overview
NameCK937823
Unique NameCK937823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_LACCB (6-phospho-beta-galactosidase OS=Lactobacillus casei (strain BL23) GN=lacG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.301e-19
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:   37 RFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            R SI+WSR+ P+G  +G V  +G++FY+ L  +  ++ ++PFVT+ H+D P+ L  + G +LS  ++ DF  YA+ CF+EF + VK+WIT+NEP S +   Y  GT  P
Sbjct:   72 RVSIAWSRIFPDG--AGEVEPRGVAFYHKLFADCAAHHIEPFVTLHHFDTPERLH-EAGDWLSQEMLDDFVAYAKFCFEEFSE-VKYWITINEPTSMAVQQYTSGTFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STRMU (6-phospho-beta-galactosidase OS=Streptococcus mutans GN=lacG PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.311e-19
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +K+ +E  ++  R SI+WSR+ P G   G VN KG++FY+NL  E     ++PFVT+ H+D P+AL  + G FL+   +  F +YAE CFKEF + V +W T NE     +  Y  G   P
Sbjct:   60 LKLAEEFGVNGIRISIAWSRIFPKGY--GAVNPKGLAFYHNLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFVNYAEFCFKEFPE-VNYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_LACCA (6-phospho-beta-galactosidase OS=Lactobacillus casei GN=lacG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.311e-19
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:   37 RFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            R SI+WSR+ P+G  +G V  +G++FY+ L  +  ++ ++PFVT+ H+D P+ L  + G +LS  ++ DF  YA+ CF+EF + VK+WIT+NEP S +   Y  GT  P
Sbjct:   72 RVSIAWSRIFPDG--AGEVEPRGVAFYHKLFADCAAHHIEPFVTLHHFDTPERLH-EAGDWLSQEMLDDFVAYAKFCFEEFSE-VKYWITINEPTSMAVQQYTTGTFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAW (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain MW2) GN=lacG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAU (6-phospho-beta-galactosidase OS=Staphylococcus aureus GN=lacG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAT (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=lacG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAS (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain MSSA476) GN=lacG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAR (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain MRSA252) GN=lacG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAN (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain N315) GN=lacG PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
[Close]
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG_STAAM (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=lacG PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++ ++  ++  R SI+WSR+ PNG   G VN KG+ +Y+ L  E     ++PFVT+ H+D P+ L  D G FL+ + +  F DYAE CFKEF + VK+W T NE     +  Y  G   P
Sbjct:   60 LELSEKFGVNGIRISIAWSRIFPNGY--GEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKD-GDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPP 176
The following BLAST results are available for this feature:
BLAST of CK937823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
LACG_LACCB3.301e-1942.206-phospho-beta-galactosidase OS=Lactobacillus case... [more]
LACG_STRMU4.311e-1940.506-phospho-beta-galactosidase OS=Streptococcus muta... [more]
LACG_LACCA4.311e-1942.206-phospho-beta-galactosidase OS=Lactobacillus case... [more]
LACG_STAAW9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAU9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAT9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAS9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAR9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAN9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAM9.605e-1939.676-phospho-beta-galactosidase OS=Staphylococcus aur... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937823 ID=CK937823; Name=CK937823; organism=Citrus sinensis; type=EST; length=400bp
GTGAAGATTATGAAGGAAATGAATTTGGATGCTTTCAGATTCTCCATCTC
CTGGTCTAGATTATTACCAAATGGAAAGCTAAGTGGTGGAGTGAACAACA
AAGGCATTAGTTTCTACAATAATCTCATCAACGAGCTCCTCTCAAATGGA
TTGCAACCCTTTGTTACTATCTTTCACTGGGATCTTCCACAGGCCCTGGA
AGATGACTATGGTGGCTTTTTAAGCCCTCGCATTGTGGCTGATTTTCAAG
ACTATGCGGAGCTTTGCTTCAAAGAATTTGGTGATCGCGTAAAGCATTGG
ATCACTTTAAATGAGCCACATTCATACAGTAATAATGGCTATAATAAGGG
TACCGATGCACCANNANNNNGTTCCAAATGGGTAAACAAAGCATGCCAGG
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