CK937823

Overview
NameCK937823
Unique NameCK937823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: MYRO_BRANA (Myrosinase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.872e-39
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWVN 387
            V +M E+N   +RFS +WSR++P GK+S GVN  G+ +Y+ LI+ LL   + PFVT+FHWDLPQ L+D+Y GFL  +I+ DF+DYA+LCFKEFG +VKHWIT+N+ ++    GY  GTDAP   S  V+
Sbjct:  103 VDVMGELNATGYRFSFAWSRIIPKGKVSRGVNQGGLDYYHKLIDALLEKNITPFVTLFHWDLPQTLQDEYEGFLDRQIIQDFKDYADLCFKEFGGKVKHWITINQLYTVPTRGYAIGTDAPGRCSPMVD 231          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL21_ARATH (Beta-glucosidase 21 OS=Arabidopsis thaliana GN=BGLU21 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.872e-39
Identity = 69/128 (53.91%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWV 384
            +++MK +N DAFR SI+WSR+ P+G+   GV+  G+ FY+ LI+ELL NG+ PFVT+FHWD PQ LED+YGGFLS  IV DF++YA+  F E+G +VK+WIT NEP  +++ GY+ G  AP   S++V
Sbjct:  100 IQLMKNLNTDAFRLSIAWSRIFPHGRKEKGVSQAGVQFYHELIDELLKNGIVPFVTVFHWDTPQDLEDEYGGFLSQNIVKDFREYADYVFTEYGGKVKNWITFNEPWVFAHAGYDLGKKAPGRCSRYV 227          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL24_ARATH (Beta-glucosidase 24 OS=Arabidopsis thaliana GN=BGLU24 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.751e-39
Identity = 68/127 (53.54%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKW 381
            +++MK +N D+FR SISW+R+ P+G+   GV+  G+ FY++LI+EL  NG+ PFVT+FHWD PQ LE++YGGFLS  IV DF++YAE  FKE+G +VKHWIT NEP  +++ GY+ G  AP   S +
Sbjct:  103 IQLMKNLNTDSFRLSISWTRIFPHGREENGVSKSGVQFYHDLIDELKRNGIIPFVTVFHWDTPQTLENEYGGFLSAHIVKDFREYAEFVFKEYGGKVKHWITFNEPWVFAHAGYDVGKKAPGRCSPY 229          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL18_ARATH (Beta-glucosidase 18 OS=Arabidopsis thaliana GN=BGLU18 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.751e-39
Identity = 68/128 (53.12%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWV 384
            +++MK++N DAFR SI+W R+ P+G++S G++  G+ FY++LI+ELL N + P VT+FHWD PQ LED+YGGFLS RIV DF +YA   F E+G +VKHWIT NEP  +S  GY+ G  AP   S ++
Sbjct:  103 IQLMKDLNTDAFRLSIAWPRIFPHGRMSKGISKVGVQFYHDLIDELLKNNIIPLVTVFHWDTPQDLEDEYGGFLSGRIVQDFTEYANFTFHEYGHKVKHWITFNEPWVFSRAGYDNGKKAPGRCSPYI 230          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL41_ARATH (Putative beta-glucosidase 41 OS=Arabidopsis thaliana GN=BGLU41 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.899e-39
Identity = 71/125 (56.80%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXS 375
            + +MK++ +DA+RFSISWSR+ PNG  +G VN  G+ +YN+LI+ LL+ G++P+VT++HWDLPQALED Y G+LS  +V DF+ YA  CFK FGDRVK+WIT NEPH  S  GY+ G  AP   S
Sbjct:   95 IDLMKDLRMDAYRFSISWSRIFPNG--TGEVNPDGVKYYNSLIDALLAKGIKPYVTLYHWDLPQALEDRYEGWLSREVVDDFEHYAFTCFKAFGDRVKYWITFNEPHGVSIQGYDTGIQAPGRCS 217          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL38_ARATH (Myrosinase 1 OS=Arabidopsis thaliana GN=TGG1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39
Identity = 71/132 (53.79%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWVNKAC 396
            + +M E+N   +RFSI+WSRLLP GK S GVN   I +YN LI+ L++  + PFVT+FHWDLPQ L+D+Y GFL+  IV DF+DYA+LCF+ FGDRVK+WIT+N+ ++    GY  GTDAP   S  ++  C
Sbjct:  101 IDVMDELNSTGYRFSIAWSRLLPKGKRSRGVNPGAIKYYNGLIDGLVAKNMTPFVTLFHWDLPQTLQDEYNGFLNKTIVDDFKDYADLCFELFGDRVKNWITINQLYTVPTRGYALGTDAPGRCSPKIDVRC 232          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL34_ORYSJ (Beta-glucosidase 34 OS=Oryza sativa subsp. japonica GN=BGLU34 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39
Identity = 71/133 (53.38%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWVNKACQ 399
            +++M +M +DA+RFSISWSR+ PNG  +G VN  GI  YN LIN LL+ G++P+VT++HWDLPQALED Y G+L  +I+ D+  YAE CF+ FGDRVKHWIT NEPH+ +   Y+ G  AP   S  ++  C+
Sbjct:   97 IQLMADMGMDAYRFSISWSRIFPNG--TGEVNQAGIDHYNKLINALLAKGIEPYVTLYHWDLPQALEDKYTGWLDRQIINDYAVYAETCFQAFGDRVKHWITFNEPHTVAVQAYDSGMHAPGRCSVLLHLYCK 227          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL19_ARATH (Beta-glucosidase 19 OS=Arabidopsis thaliana GN=BGLU19 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39
Identity = 70/136 (51.47%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWV---NKACQ 399
            +++MK++N D FR SISW R+ P+G++  G++ +G+ FY++LI+ELL N + P VT+FHWD P  LED+YGGFLS RIV DF +YA   F E+GD+VK+WIT NEP  +S +GY+ G  AP   S +V    K CQ
Sbjct:   97 IQLMKKLNTDGFRLSISWPRIFPHGRMEKGISKEGVQFYHDLIDELLKNDITPLVTVFHWDTPADLEDEYGGFLSERIVPDFVEYANFTFHEYGDKVKNWITFNEPWVFSRSGYDVGKKAPGRCSPYVKEFGKLCQ 232          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: MYR3_SINAL (Myrosinase MB3 OS=Sinapis alba PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.356e-39
Identity = 69/129 (53.49%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSKWVN 387
            V+IM E+N   +RFS +WSR++P GK+S GV+  G+ +Y+NLI+ LL   + PFVT+FHWDLPQ L+D+Y GFL  +I+ DF+DYA+LCFKEFG +VK+WIT+N+ ++    GY  GTDAP   S  V+
Sbjct:  103 VEIMGELNATGYRFSFAWSRIVPKGKVSRGVDQAGLDYYHNLIDALLEKNITPFVTLFHWDLPQTLQDEYEGFLDRQIIQDFKDYADLCFKEFGGKVKNWITINQLYTVPTRGYALGTDAPGRCSPKVD 231          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL04_ARATH (Beta-glucosidase 4 OS=Arabidopsis thaliana GN=BGLU4 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.356e-39
Identity = 72/126 (57.14%), Postives = 97/126 (76.98%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSK 378
            VK+M + NLDAFRFSISWSRL+PNG+  G VN KG+ FY NLI EL+S+G++P VT++H+D PQ+LED+YGG+L+ R++ DF  YA++CF+EFG+ VK W T+NE + +S  GYN G   P   SK
Sbjct:   84 VKLMVDTNLDAFRFSISWSRLIPNGR--GPVNQKGLQFYKNLIQELVSHGIEPHVTLYHYDHPQSLEDEYGGWLNHRMIKDFTTYADVCFREFGNHVKLWTTINEANIFSIGGYNDGDTPPGRCSK 207          
The following BLAST results are available for this feature:
BLAST of CK937823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
MYRO_BRANA2.872e-3953.49Myrosinase OS=Brassica napus PE=2 SV=1[more]
BGL21_ARATH2.872e-3953.91Beta-glucosidase 21 OS=Arabidopsis thaliana GN=BGL... [more]
BGL24_ARATH3.751e-3953.54Beta-glucosidase 24 OS=Arabidopsis thaliana GN=BGL... [more]
BGL18_ARATH3.751e-3953.13Beta-glucosidase 18 OS=Arabidopsis thaliana GN=BGL... [more]
BGL41_ARATH4.899e-3956.80Putative beta-glucosidase 41 OS=Arabidopsis thalia... [more]
BGL38_ARATH6.398e-3953.79Myrosinase 1 OS=Arabidopsis thaliana GN=TGG1 PE=1 ... [more]
BGL34_ORYSJ6.398e-3953.38Beta-glucosidase 34 OS=Oryza sativa subsp. japonic... [more]
BGL19_ARATH6.398e-3951.47Beta-glucosidase 19 OS=Arabidopsis thaliana GN=BGL... [more]
MYR3_SINAL8.356e-3953.49Myrosinase MB3 OS=Sinapis alba PE=1 SV=1[more]
BGL04_ARATH8.356e-3957.14Beta-glucosidase 4 OS=Arabidopsis thaliana GN=BGLU... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004481_D06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937823 ID=CK937823; Name=CK937823; organism=Citrus sinensis; type=EST; length=400bp
GTGAAGATTATGAAGGAAATGAATTTGGATGCTTTCAGATTCTCCATCTC
CTGGTCTAGATTATTACCAAATGGAAAGCTAAGTGGTGGAGTGAACAACA
AAGGCATTAGTTTCTACAATAATCTCATCAACGAGCTCCTCTCAAATGGA
TTGCAACCCTTTGTTACTATCTTTCACTGGGATCTTCCACAGGCCCTGGA
AGATGACTATGGTGGCTTTTTAAGCCCTCGCATTGTGGCTGATTTTCAAG
ACTATGCGGAGCTTTGCTTCAAAGAATTTGGTGATCGCGTAAAGCATTGG
ATCACTTTAAATGAGCCACATTCATACAGTAATAATGGCTATAATAAGGG
TACCGATGCACCANNANNNNGTTCCAAATGGGTAAACAAAGCATGCCAGG
back to top