CK937823

Overview
NameCK937823
Unique NameCK937823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL04_ORYSJ (Beta-glucosidase 4 OS=Oryza sativa subsp. japonica GN=BGLU4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.441e-32
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++M  +   A+RFSISW R+ P+G L   VN +G++FYN+LIN ++  G++P+ T++HWDLP  L+   GG+LS +IV  F  YAE CF  FGDRVKHWIT+NEP   + NGY  G  AP
Sbjct:   74 IELMASLGFRAYRFSISWPRIFPDG-LGKNVNEQGVAFYNDLINFMIEKGIEPYATLYHWDLPHNLQQTVGGWLSDKIVEYFALYAEACFANFGDRVKHWITINEPLQTAVNGYGIGHFAP 193          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LCTL_HUMAN (Lactase-like protein OS=Homo sapiens GN=LCTL PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 9.893e-32
Identity = 59/119 (49.58%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    7 IMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +++E++++ +RFS+SW RLLP G  +  VN KGI FY++LI+ LLS+ + P VT+ HWDLPQ L+  YGG+ +  +   F+DYA LCF+ FGDRVKHWIT ++P + +  GY  G  AP
Sbjct:   99 LLRELHVNHYRFSLSWPRLLPTGIRAEQVNKKGIEFYSDLIDALLSSNITPIVTLHHWDLPQLLQVKYGGWQNVSMANYFRDYANLCFEAFGDRVKHWITFSDPRAMAEKGYETGHHAP 217          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL1B_PHACH (Beta-glucosidase 1B OS=Phanerochaete chrysosporium GN=BGL1B PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.893e-32
Identity = 64/126 (50.79%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLS-PRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXS 375
            V ++ +  + ++RFSISWSR++P G  +  VN  GI FY++LI+ LL  G+ PFVT++HWDLPQAL D Y G+L+   IV D+  YA +CF+ FGDRVKHW+T+NEP   S  GY +G  AP   S
Sbjct:   70 VDLLVQYGVKSYRFSISWSRIIPLGGRNDPVNEAGIKFYSDLIDALLERGIVPFVTLYHWDLPQALHDRYLGWLNKDEIVQDYVRYAGVCFERFGDRVKHWLTMNEPWCISILGYGRGVFAPGRSS 195          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGLC_BACSU (Aryl-phospho-beta-D-glucosidase bglC OS=Bacillus subtilis GN=bglC PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.292e-31
Identity = 60/114 (52.63%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGY 342
            V +M EM L A+RFS+SW R+ P GK  G +N  G++FY++LI+ELLS+ ++P +T++HWDLPQAL D+YGGF S  I+ DF  Y    +K FGDRVK+W+TLNE +   N+G+
Sbjct:   68 VALMAEMGLKAYRFSVSWPRVFPKGK--GEINEAGLAFYDSLIDELLSHHIEPVLTLYHWDLPQALMDEYGGFESRNIIEDFNHYCITLYKRFGDRVKYWVTLNEQNYNFNHGF 179          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: GBA3_CAVPO (Cytosolic beta-glucosidase OS=Cavia porcellus GN=Gba3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.688e-31
Identity = 63/121 (52.07%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +K +K++ L  +RFSISWSRLLP+G  +G +N KG+ +YN +I++LL+NG+ P VT++H+DLPQALED  GG+LS  I+  F  YA+ CF  FG+RV+ WIT+NEP+     GY+ G  AP
Sbjct:   63 LKCIKQLGLTHYRFSISWSRLLPDGT-TGFINQKGVDYYNKIIDDLLTNGVTPVVTLYHFDLPQALEDQ-GGWLSEAIIEVFDKYAQFCFSTFGNRVRQWITINEPNVLCAMGYDLGFFAP 181          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: GBA3_PONAB (Cytosolic beta-glucosidase OS=Pongo abelii GN=GBA3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.413e-31
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +K +K++ L  +RFS+SWSRLLP+G  +G +N KGI +YN +I++LL NG+ P VT++H+DLPQALED  GG+LS  I+  F  YA+ CF  FGDRVK WIT+NE +  S   Y+ G   P
Sbjct:   63 LKCIKQLGLTHYRFSLSWSRLLPDGT-TGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQALEDQ-GGWLSEAIIESFDKYAQFCFSTFGDRVKKWITINEANVLSVMSYDLGMFPP 181          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL47_ARATH (Beta-glucosidase 47 OS=Arabidopsis thaliana GN=BGLU47 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.413e-31
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    7 IMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXSK 378
            +M+++ ++++R S+SW+R+LP G+  G VN  GI  YN +IN++L  G++PFVT+ H+D+PQ LE  YG +L+P+I  DF+ YA +CF+ FGDRVK W T NEP+     GY  GT  P   SK
Sbjct:  120 LMEDLGVNSYRLSLSWARILPKGRF-GDVNMGGIDHYNRMINDILKTGIEPFVTLTHYDIPQELEYRYGSWLNPQIREDFEHYANICFRHFGDRVKFWSTFNEPNVQVILGYRTGTYPPSRCSK 242          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: GBA3_HUMAN (Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.429e-30
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            +K +K++ L  +RFS+SWSRLLP+G  +G +N KGI +YN +I++LL NG+ P VT++H+DLPQ LED  GG+LS  I+  F  YA+ CF  FGDRVK WIT+NE +  S   Y+ G   P
Sbjct:   63 LKCIKQLGLTHYRFSLSWSRLLPDGT-TGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLEDQ-GGWLSEAIIESFDKYAQFCFSTFGDRVKQWITINEANVLSVMSYDLGMFPP 181          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: BGL16_ORYSJ (Beta-glucosidase 16 OS=Oryza sativa subsp. japonica GN=BGLU16 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.866e-30
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAPXXXS 375
            V I+  + ++++RFSISW+R+LP G+L GGVN+ GI+FYN LIN LL  G+QPFVT+ H+D+P  LE  YGG+L   I  +F+ Y+++CF  FGDRV+ W T NEP+  + + Y  G   P   S
Sbjct:   93 VDILHNLGVNSYRFSISWARILPRGRL-GGVNSAGIAFYNRLINALLQKGIQPFVTLNHFDIPHELETRYGGWLGAAIREEFEYYSDVCFNAFGDRVRFWTTFNEPNLSTRHQYILGEFPPNHCS 216          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LCTL_MOUSE (Lactase-like protein OS=Mus musculus GN=Lctl PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.437e-30
Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            + ++KE+ +  +RFS+SW RLLP G  +  VN +GI FY++ I+ LL + + P VT+ HWDLPQ L+  YGG+ +  +   F DYA+LCF+ FGDRVKHW+T ++P +    GY  G  AP
Sbjct:   96 IALLKELQVSHYRFSLSWPRLLPTGVRAEQVNKRGIKFYSDFIDALLKSNITPVVTLHHWDLPQMLQVAYGGWQNVSMTRYFSDYADLCFEVFGDRVKHWLTFSDPRTMVEKGYETGLHAP 216          
The following BLAST results are available for this feature:
BLAST of CK937823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
BGL04_ORYSJ4.441e-3250.41Beta-glucosidase 4 OS=Oryza sativa subsp. japonica... [more]
LCTL_HUMAN9.893e-3249.58Lactase-like protein OS=Homo sapiens GN=LCTL PE=1 ... [more]
BGL1B_PHACH9.893e-3250.79Beta-glucosidase 1B OS=Phanerochaete chrysosporium... [more]
BGLC_BACSU1.292e-3152.63Aryl-phospho-beta-D-glucosidase bglC OS=Bacillus s... [more]
GBA3_CAVPO1.688e-3152.07Cytosolic beta-glucosidase OS=Cavia porcellus GN=G... [more]
GBA3_PONAB6.413e-3152.07Cytosolic beta-glucosidase OS=Pongo abelii GN=GBA3... [more]
BGL47_ARATH6.413e-3147.58Beta-glucosidase 47 OS=Arabidopsis thaliana GN=BGL... [more]
GBA3_HUMAN1.429e-3051.24Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3... [more]
BGL16_ORYSJ1.866e-3048.80Beta-glucosidase 16 OS=Oryza sativa subsp. japonic... [more]
LCTL_MOUSE2.437e-3046.28Lactase-like protein OS=Mus musculus GN=Lctl PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937823 ID=CK937823; Name=CK937823; organism=Citrus sinensis; type=EST; length=400bp
GTGAAGATTATGAAGGAAATGAATTTGGATGCTTTCAGATTCTCCATCTC
CTGGTCTAGATTATTACCAAATGGAAAGCTAAGTGGTGGAGTGAACAACA
AAGGCATTAGTTTCTACAATAATCTCATCAACGAGCTCCTCTCAAATGGA
TTGCAACCCTTTGTTACTATCTTTCACTGGGATCTTCCACAGGCCCTGGA
AGATGACTATGGTGGCTTTTTAAGCCCTCGCATTGTGGCTGATTTTCAAG
ACTATGCGGAGCTTTGCTTCAAAGAATTTGGTGATCGCGTAAAGCATTGG
ATCACTTTAAATGAGCCACATTCATACAGTAATAATGGCTATAATAAGGG
TACCGATGCACCANNANNNNGTTCCAAATGGGTAAACAAAGCATGCCAGG
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