CK937797

Overview
NameCK937797
Unique NameCK937797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 46/141 (32.62%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  287 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVK 706
            F+   +F++A   Y    FG  G++ D  +EI A  AH   +T                CY  E+   S+ YCD+     YPC+    Y+GRG I + WN+NYG  G A   D L  PE +  +  ++F+ A+W WM  V+
Sbjct:   93 FYTRDAFLSALNSYTD--FGRVGSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVR 218          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 52/170 (30.59%), Postives = 75/170 (44.12%), Query Frame = 2
Query:  236 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDAFV 739
            FE   S RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T  G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    DL+N+P+ +  +  ++F  AIW WMT  + + PS H+  +
Sbjct:   36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSFP--GFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVII 181          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 50/169 (29.59%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  236 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMK-EICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDAFV 739
            F +    R+     A GF+ Y +FI A   +    FGT+G   + ++ E+ AF      +T+ G    +     WG C+  E++ + S                 YYGRG I +    NY A G AL  DL+ +P+ +  +A ++F+ AIW WMT  + + PS HD  +
Sbjct:   41 FNSMLPNRDNSQCPARGFYTYDAFIAAANSFP--AFGTSGGSAELIRRELAAFFGQTSHETTGGTR-GSSDQFQWGYCFKEEINKATS---------------PPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMT-AQGNKPSCHDVIL 190          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 50/170 (29.41%), Postives = 76/170 (44.71%), Query Frame = 2
Query:  236 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDAFV 739
            FE   S RN     A GF+ Y +FI A   +   GFGT G    + KEI AF      +T+ G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    +L+N+P+ +  +  ++F+ AIW WMT  + + PS H+  +
Sbjct:   36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSFP--GFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTE-QDNKPSCHNVII 181          
The following BLAST results are available for this feature:
BLAST of CK937797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHI4_PHAVU1.248e-1532.62Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_SOLCI3.630e-1530.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_ORYSJ8.087e-1529.59Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLLC4.013e-1429.41Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_H07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937797 ID=CK937797; Name=CK937797; organism=Citrus sinensis; type=EST; length=739bp
AGGGAGATCTGGTGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGG
CAATGACACTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCA
AATGGAGATGAATCAGAGAAGGTGATAGTGAAGAAGTTGAAGGGGAAAAA
AGTTTGCATAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTA
ACGAGACGATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTC
TCGAAAAGGAACACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCA
GTCTTTCATTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCA
CCGGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCAC
GTGGGCTGCAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATT
GGCCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATT
GTGATGATTCCTACAAATACACATATCCCTGCACCCCTGGAGCTGAGTAC
TATGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAGCCAC
TGGGGAAGCATTGAAGGCAGATCTGTTGAATCATCCCGAATACATTGAGC
AGAATGCTACCCTTGCCTTTGAGGCTGCAATTTGGAAGTGGATGACCCCA
GTCAAGAAATCNNNGCCTTCAGCCCATGATGCCTTTGTT
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