CK937772

Overview
NameCK937772
Unique NameCK937772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 72/232 (31.03%), Postives = 105/232 (45.26%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQIV A   GD  +  A    L ++G      + AAAY  GL++  +                          A  RR   A+LD+GL +   G RVF            IPH           G+++  +  R  I G HVA Y   L E+ PE Y+  F+ Y+++G++ + L   +++V   I
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPH-----------GEEVLPDEDR--IKGKHVAEYAEKLKEENPEAYKARFSRYLQRGLEPEKLPEHFEEVKKKI 191          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 69/236 (29.24%), Postives = 109/236 (46.19%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R+++ ++RRREGKTDYRAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G ++ AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH +      S+             I G H+  Y  +L E+E  K    F++Y+++G+    L   + ++   I
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGESVLPDESR-------------IRGEHIMEYAESLDEEELRK---RFSKYLERGLSPVDLPEHFDEIKKRI 188          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 66/231 (28.57%), Postives = 107/231 (46.32%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            ++VK++RRRE KTDYR R++L+   K        R V R T    IAQIV  +  GD  + +A++ EL + G +    +  +AY TG LL ++ L         +G  EA                  +LD+GL + T GN +F            IPH ++      +             I G H+ AY   L E + E+Y+  F++Y++KG++ + L   ++++ A I
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTEA------------------VLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPSEER-------------IRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 70/232 (30.17%), Postives = 104/232 (44.83%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V ++RRREG T+YR R RLI   K        R VVR TNK IIAQ+V A   GD  +       L ++G      + +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF            IPH           G+++  E  R  + G HVA Y + L E+ PE Y+  F+ Y+++G+  + L   +++V   I
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEVKKKI 191          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 67/238 (28.15%), Postives = 104/238 (43.70%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            A+   ++VKY+RRREGKT+Y  R   +    +       R VVR TNK +I Q V  +  GD  +AAA++ EL ++G +    +  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   + G H+A Y   L +++P+KY+  F+ Y+ +G+D   L A +K+V  +I++
Sbjct:    2 AHGPNYKVKYRRRREGKTNYYRRYTYVLNRSD-------RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKK--------AGMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEVLNSIKS 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 66/235 (28.09%), Postives = 112/235 (47.66%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++VK++RRREGKTD Y+ RI +I        + K R VVRF+N+ ++AQ++ +   GD  +A A + EL  ++G   G  +  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F            +PH +             + +     + G H+A Y + L +  PE Y+  F++Y+ +G++ + +    ++V + I
Sbjct:    6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDE-------------EVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPENISKHIEEVKSKI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 73/229 (31.88%), Postives = 103/229 (44.98%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKV 786
            R++V  +RRREGKT+Y  R +++            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL +  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF            +P  ++      +             I G H+A++   L E  PE Y+  F++YI +G D   L   +++V
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 65/232 (28.02%), Postives = 102/232 (43.97%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQ+V A   GD  +       L ++G +    +  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH ++      +             I G H+A Y   L ++ PE Y+T F+ Y+++G+  + L   +++V   I
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDR-------------ISGKHIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEVKKKI 191          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 70/233 (30.04%), Postives = 104/233 (44.64%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V  +RRREGKT+Y  R RL+   K        R  VR +N+ +  Q + A I GD V+AAA++ EL  ++G +    +  AAY TG L   R L+                          +    A+LDVGL K   G+RVF            IPHS++   G        D  V  +     H+A +   L E+  E YQ  F+ Y+ +G++ + L    ++V  AI
Sbjct:    6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPG--------DERVRCE-----HIAQWAEALKEENAELYQRQFSRYLDRGLNPEELPGHVEEVKKAI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V ++RRREG T+YR R +L+   K        R VVR TNK +IAQIV A   GD  +       L ++G +    + +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH +             +     + I G HVA Y   L E+ PE Y+  F+ Y+++G+  + L + +++V   I
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKKI 191          
The following BLAST results are available for this feature:
BLAST of CK937772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RL18_PYRAE8.813e-1931.0350S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_METTH1.151e-1829.2450S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_METJA1.151e-1828.5750S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_THENV5.713e-1830.1750S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METS51.662e-1728.1550S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_CALMQ1.662e-1728.0950S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL18_STAMF2.835e-1731.8850S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_PYRIL2.835e-1728.0250S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_AERPE2.835e-1730.0450S ribosomal protein L18P OS=Aeropyrum pernix GN=... [more]
RL18_PYRCJ3.703e-1728.4550S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_B01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937772 ID=CK937772; Name=CK937772; organism=Citrus sinensis; type=EST; length=846bp
GGGGTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCACTTACAACTCGAA
AGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCA
AGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTAC
AGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACC
CAAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGA
TAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCC
CATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAGCTATGCTGC
AGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTG
AAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTAC
TCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGT
TGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGG
GAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCT
GGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTA
TATCTACGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATG
AGCCAGAGAAGTATCAAACTCACTTCACTGAGTACATCAAGAAAGGAATT
GATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCG
TGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCAAAGAA
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