CK937772

Overview
NameCK937772
Unique NameCK937772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 73/246 (29.67%), Postives = 106/246 (43.09%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA 837
            R++V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q++     GD V+AAA++ EL + YG +    S  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  D                     I G H+A+Y  +L  + PE+YQ  F + +++G+  +     +++V A I  D    K E+PA
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED---YKVEQPA 201          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16
Identity = 70/237 (29.54%), Postives = 107/237 (45.15%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    +  +AY  GLL+  +  K           +E                  A+LD+GL     G+ VF            +PHS + F            E +R  I G H+A Y   L E + EK++  F  Y++KG+D + L   + +V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.556e-15
Identity = 67/232 (28.88%), Postives = 111/232 (47.84%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    +  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE E Y+  F++Y++KG++ + L   ++++   I
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.556e-15
Identity = 67/232 (28.88%), Postives = 111/232 (47.84%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            + +V ++RRREGKTD+R R+ L+   K        R V R +  +IIAQ+++ +  GD VL +A++ EL + G +    +  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP            G+++ A+  R  + G H+  Y   L EDE E Y+  F++Y++KG++ + L   ++++   I
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.032e-15
Identity = 69/237 (29.11%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR +    IAQIV  +  GD  + +A+  EL R +G +    +  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF            +PHS++ +            E +R  I G H+A Y   L E++  KY+  F+ Y+ KG++ + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIYP-----------EDYR--ITGEHIANYAKALKEEDEGKYRKQFSSYLVKGLEPEKLPEHFEEVKARI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.032e-15
Identity = 68/237 (28.69%), Postives = 104/237 (43.88%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    +  +AY  GLL+                        Y  + A       A+LD+GL     G+ VF            +PHS + F    +             I G H+A Y   L E + EK++  F  Y+ KG+D + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15
Identity = 67/232 (28.88%), Postives = 100/232 (43.10%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V  KRRREGKT+Y  R +LI   K        R VVR  ++  I QI  A   GD V+A+A+++EL +YG +    +  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF            IP  D       +D +          + G H+A Y   L E  PE ++  F+ Y+  G+D + L   +  V   I
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRFSGYLSAGLDPESLPEHFDSVKQKI 191          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15
Identity = 67/237 (28.27%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    +  +AY  GLL+  +  K           +E                  A+LD+GL     G+ +F            +PHS + F            E +R  I G H+A Y   L E + ++++  F  Y++KG+D + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEKLPEHFEEVKARI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 68/237 (28.69%), Postives = 106/237 (44.73%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR T    +AQIV     GD  + +A+  EL R +G +    +  +AY  GLL+  + L         E  +E                  A+LD+GL   T G+ +F            +PHS++ + G              + I G H+A Y   L ED+ E Y+  F  Y+ KG++ + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPEKLPEHFEEVKARI 191          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 67/233 (28.76%), Postives = 106/233 (45.49%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            R++V ++RRREGKT+Y  R++L+        + K R VVR +    IAQI+  N  GD  + +A+  EL R +G +    +  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF            +PHS++ F            E +R  I G HVA Y   L +++   Y+  F  Y+ KG++ + L   +++V A I
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQFGGYLVKGLEPEKLPEHFEEVKAKI 192          
The following BLAST results are available for this feature:
BLAST of CK937772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RL18_IGNH45.347e-1629.6750S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_PYRAB6.983e-1629.5450S ribosomal protein L18P OS=Pyrococcus abyssi GN... [more]
RL18_METVS1.556e-1528.8850S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA1.556e-1528.8850S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_THEON2.032e-1529.1150S ribosomal protein L18P OS=Thermococcus onnurin... [more]
RL18_PYRFU2.032e-1528.6950S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]
RL18_THEPD2.654e-1528.8850S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_PYRHO2.654e-1528.2750S ribosomal protein L18P OS=Pyrococcus horikoshi... [more]
RL18_THESM3.466e-1528.6950S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_THEGJ5.912e-1528.7650S ribosomal protein L18P OS=Thermococcus gammato... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_B01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937772 ID=CK937772; Name=CK937772; organism=Citrus sinensis; type=EST; length=846bp
GGGGTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCACTTACAACTCGAA
AGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCA
AGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTAC
AGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACC
CAAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGA
TAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCC
CATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAGCTATGCTGC
AGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTG
AAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTAC
TCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGT
TGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGG
GAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCT
GGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTA
TATCTACGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATG
AGCCAGAGAAGTATCAAACTCACTTCACTGAGTACATCAAGAAAGGAATT
GATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCG
TGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCAAAGAA
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