CK937772

Overview
NameCK937772
Unique NameCK937772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 67/236 (28.39%), Postives = 106/236 (44.92%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRAD 807
            R++V ++RRREGKT+Y  R  LI  D         R V R T    IAQIV     GD  LA+A++ EL  ++G +    +  AAY TG L   R L         E  +E                 RA++D+GL +   G+RVF            IPH ++      +             I G H+A     + E++PE+Y+  F++Y+++G+  + L   +++V + I  +
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT+Y  R++L+        + K R VVR T    IAQIV  +  GD  L +A+  EL R +G +    +  +AY  GLL+                        Y  + A       A+LD+GL   T G+ +F            +PHS+           ++  E +R  I G H+A Y   L E++   Y+  F+ Y+ KG++ + L   +++V A I
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPEHFEEVKAKI 192          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 70/235 (29.79%), Postives = 100/235 (42.55%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRAD 807
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      +  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L  DEP  Y   F        DA  L A + +   AI  D
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP-LYSGDF--------DATALPAHFDETREAIMED 183          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 70/235 (29.79%), Postives = 100/235 (42.55%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRAD 807
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      +  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L  DEP  Y   F        DA  L A + +   AI  D
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP-LYSGDF--------DATALPAHFDETREAIMED 183          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.317e-14
Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 588
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    S  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ +
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 60/192 (31.25%), Postives = 84/192 (43.75%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 678
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      +  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ +       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 68/229 (29.69%), Postives = 94/229 (41.05%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME----------DEPEKYQTHFTEYIKKGIDAD 759
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    +  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH+D   A + +               G H+A Y   L E          D PE    HF E  +  +D D
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEEPLYSGDFDAADLPE----HFDELRETLLDGD 184          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   67 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 207
            FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 60/234 (25.64%), Postives = 100/234 (42.74%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            ++VK +RRREGKT+Y  R   +   +        RF+VR TNK +I QI   +  GD ++A+A++ EL  ++G +    +  AAY TG L   R +K                          R     + D+GL   + GNRVF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+++G++ + L + ++++   I++
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENLPSHFEEILNKIKS 196          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 61/217 (28.11%), Postives = 92/217 (42.40%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGID 753
            +++K++RRREGKTDY  R   +  +         RFV R TNK +I  +   +  GD ++A A++ EL  +YG +    +  AAY TG L   R +K           V+A                 A+ D+GL     G R+F            +P  D         GK  D       + G H++AY   L  +  E Y   F+ YI++G+D
Sbjct:    7 YRIKFRRRREGKTDYYTRYTYVINNA-------IRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGLD 176          
The following BLAST results are available for this feature:
BLAST of CK937772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RL18_METKA5.912e-1528.3950S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_PYRKO7.721e-1528.6950S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_HALSA7.721e-1529.7950S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS37.721e-1529.7950S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_METMJ1.317e-1435.1950S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METB62.246e-1431.2550S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_HALMA3.832e-1429.6950S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL5_RABIT1.456e-1374.4760S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]
RL18_SULSO1.456e-1325.6450S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_SULAC3.244e-1328.1150S ribosomal protein L18P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_B01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937772 ID=CK937772; Name=CK937772; organism=Citrus sinensis; type=EST; length=846bp
GGGGTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCACTTACAACTCGAA
AGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCA
AGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTAC
AGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACC
CAAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGA
TAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCC
CATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAGCTATGCTGC
AGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTG
AAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTAC
TCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGT
TGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGG
GAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCT
GGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTA
TATCTACGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATG
AGCCAGAGAAGTATCAAACTCACTTCACTGAGTACATCAAGAAAGGAATT
GATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCG
TGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCAAAGAA
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