CK937772
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15 Identity = 67/236 (28.39%), Postives = 106/236 (44.92%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRAD 807 R++V ++RRREGKT+Y R LI D R V R T IAQIV GD LA+A++ EL ++G + + AAY TG L R L E +E RA++D+GL + G+RVF IPH ++ + I G H+A + E++PE+Y+ F++Y+++G+ + L +++V + I + Sbjct: 9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15 Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1 Query: 91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798 A+ R++V ++RRREGKT+Y R++L+ + K R VVR T IAQIV + GD L +A+ EL R +G + + +AY GLL+ Y + A A+LD+GL T G+ +F +PHS+ ++ E +R I G H+A Y L E++ Y+ F+ Y+ KG++ + L +++V A I Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPEHFEEVKAKI 192
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15 Identity = 70/235 (29.79%), Postives = 100/235 (42.55%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRAD 807 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG + AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L DEP Y F DA L A + + AI D Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP-LYSGDF--------DATALPAHFDETREAIMED 183
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15 Identity = 70/235 (29.79%), Postives = 100/235 (42.55%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRAD 807 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG + AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L DEP Y F DA L A + + AI D Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL--DEP-LYSGDF--------DATALPAHFDETREAIMED 183
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.317e-14 Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 588 R+ V ++RR EGKTDY R+ L++ TP R VVR TN+ II Q+V + GDS L AAY+ EL YG E S AAY TG+L A V+A Y A+LD+GL + G RVF +P+ + Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14 Identity = 60/192 (31.25%), Postives = 84/192 (43.75%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 678 R+ V ++RRREG+TDY R +L+ D R VVR TN+ II Q+V+A + GD L +A + EL +YG + AAY TGLL A + K G+D A+LD+GL + T G RVF IP+ + + + G H+AAY Sbjct: 6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14 Identity = 68/229 (29.69%), Postives = 94/229 (41.05%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLME----------DEPEKYQTHFTEYIKKGIDAD 759 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD LA+A++ +L YG E + +AY TGLL R E VE A+LD+GL T G++VF IPH+D A + + G H+A Y L E D PE HF E + +D D Sbjct: 6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR-------------TRGAHIAEYDEQLEEPLYSGDFDAADLPE----HFDELRETLLDGD 184
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 67 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 207 FVK K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP + Sbjct: 2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13 Identity = 60/234 (25.64%), Postives = 100/234 (42.74%), Query Frame = 1 Query: 106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804 ++VK +RRREGKT+Y R + + RF+VR TNK +I QI + GD ++A+A++ EL ++G + + AAY TG L R +K R + D+GL + GNRVF IP D + I G H+A Y L + + Y F+ Y+++G++ + L + ++++ I++ Sbjct: 10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENLPSHFEEILNKIKS 196
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13 Identity = 61/217 (28.11%), Postives = 92/217 (42.40%), Query Frame = 1 Query: 106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGID 753 +++K++RRREGKTDY R + + RFV R TNK +I + + GD ++A A++ EL +YG + + AAY TG L R +K V+A A+ D+GL G R+F +P D GK D + G H++AY L + E Y F+ YI++G+D Sbjct: 7 YRIKFRRRREGKTDYYTRYTYVINNA-------IRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGLD 176 The following BLAST results are available for this feature:
BLAST of CK937772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 96
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937772 ID=CK937772; Name=CK937772; organism=Citrus sinensis; type=EST; length=846bpback to top |