CK937772

Overview
NameCK937772
Unique NameCK937772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9350 contig Csv1_Contig9350:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 55/196 (28.06%), Postives = 81/196 (41.33%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 690
            R+ V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ+V     GD  +A+A + +L  +G E    +  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF            +PH++  FA + +               G H+A Y   L
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR-------------TRGAHIAEYAEQL 155          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULIY (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 58/234 (24.79%), Postives = 102/234 (43.59%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            +++K +RRREGKT+Y  R   +        + + RF+VR TNK +I QI   +  GD ++A+A++ EL  ++  +    +  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+ +G++ + L + ++++   I++
Sbjct:    7 YKIKPRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNKIKS 193          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULIM (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 58/234 (24.79%), Postives = 102/234 (43.59%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            +++K +RRREGKT+Y  R   +        + + RF+VR TNK +I QI   +  GD ++A+A++ EL  ++  +    +  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+ +G++ + L + ++++   I++
Sbjct:    7 YKIKPRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNKIKS 193          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULIL (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 58/234 (24.79%), Postives = 102/234 (43.59%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            +++K +RRREGKT+Y  R   +        + + RF+VR TNK +I QI   +  GD ++A+A++ EL  ++  +    +  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+ +G++ + L + ++++   I++
Sbjct:    7 YKIKPRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNKIKS 193          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULIK (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 58/234 (24.79%), Postives = 102/234 (43.59%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            +++K +RRREGKT+Y  R   +        + + RF+VR TNK +I QI   +  GD ++A+A++ EL  ++  +    +  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+ +G++ + L + ++++   I++
Sbjct:    7 YKIKPRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNKIKS 193          
BLAST of CK937772 vs. ExPASy Swiss-Prot
Match: RL18_SULIA (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 58/234 (24.79%), Postives = 102/234 (43.59%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            +++K +RRREGKT+Y  R   +        + + RF+VR TNK +I QI   +  GD ++A+A++ EL  ++  +    +  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+ +G++ + L + ++++   I++
Sbjct:    7 YKIKPRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNKIKS 193          
The following BLAST results are available for this feature:
BLAST of CK937772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RL18_NATPD1.044e-1128.0650S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_SULIY1.780e-1124.7950S ribosomal protein L18P OS=Sulfolobus islandicu... [more]
RL18_SULIM1.780e-1124.7950S ribosomal protein L18P OS=Sulfolobus islandicu... [more]
RL18_SULIL1.780e-1124.7950S ribosomal protein L18P OS=Sulfolobus islandicu... [more]
RL18_SULIK1.780e-1124.7950S ribosomal protein L18P OS=Sulfolobus islandicu... [more]
RL18_SULIA1.780e-1124.7950S ribosomal protein L18P OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_B01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937772 ID=CK937772; Name=CK937772; organism=Citrus sinensis; type=EST; length=846bp
GGGGTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCACTTACAACTCGAA
AGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCA
AGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTAC
AGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACC
CAAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGA
TAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCC
CATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAGCTATGCTGC
AGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTG
AAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTAC
TCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGT
TGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGG
GAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCT
GGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTA
TATCTACGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATG
AGCCAGAGAAGTATCAAACTCACTTCACTGAGTACATCAAGAAAGGAATT
GATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCG
TGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCAAAGAA
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