CK937761

Overview
NameCK937761
Unique NameCK937761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.685e-53
Identity = 110/202 (54.46%), Postives = 129/202 (63.86%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL   G  V A                  I                       DV+ + KT ENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL T KIT F+KF+ GN+VM
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALN--GREVNA------------------ILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 107/202 (52.97%), Postives = 129/202 (63.86%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT                         +I                       DV++I KT E FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI + IKFD GN+ M
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALT--------------------NSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 109/202 (53.96%), Postives = 125/202 (61.88%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT                          I                       DV+SI KT ENFRLL+D KGRF L  I  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E+ KIT FI F+V N+ M
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALT--------------------KKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 105/202 (51.98%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   G+ V                   +I                       DV+++ KT E FRL+YD KGRF +H I  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ + KIT++IKFD GN+ M
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALN--GAEVT------------------KIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 105/205 (51.22%), Postives = 126/205 (61.46%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRA---QNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL   G  V+A   Q H  V                                    DV+++  TNE+FRL YD KG+F +H I  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL T KI  FIKFD G +VM
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALC--GREVKAIMMQQHVQV---------------------VGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVM 182          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 101/183 (55.19%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  171 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVM 719
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  G  V+                  +I                       DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ M
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALT--GDEVK------------------KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCM 163          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.500e-45
Identity = 100/198 (50.51%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 713
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL          N+T             +I                       DVV+I +TNE FR+LYDTKGR+ +H I+  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++ T KIT+ +KF+ GN+
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYAL----------NYTEAK----------KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNL 179          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.097e-39
Identity = 93/199 (46.73%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  117 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLGSWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 713
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL         ++ T +           Q                        DVV I KT+++FR+LYDTKGRF L S+  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI  F   + GNV
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALN-------GRDVTLILNDKEGNVFVDQ-----------KVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNV 181          
BLAST of CK937761 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 75/194 (38.66%), Postives = 102/194 (52.58%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTLLG-SWVRAQNHTCVHXXXXXXXXXFQI*AXXXXXXXXXXXXXXXXXXXXXDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFI 692
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA      S + A+ +  V+                                   DVVSI KT E+FR+LY+   +F LH I  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  ET+K+ E+I
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHF---------------------PVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172          
The following BLAST results are available for this feature:
BLAST of CK937761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS4_YARLI5.685e-5354.4640S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_CARGR6.285e-5252.9740S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_DICDI4.074e-5153.9640S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_DROME6.949e-5151.9840S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_CANAL8.495e-4951.2240S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE3.569e-4755.1940S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_CAEEL1.500e-4550.5140S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH2.097e-3946.7340S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU9.140e-2738.6640S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937761 ID=CK937761; Name=CK937761; organism=Citrus sinensis; type=EST; length=739bp
GGGGGCGGGAGTGCATTTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACCCTGCTGGGTTCATGGG
TGCGGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGAT
ATCATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTT
TTTTAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAATTC
CAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTC
CGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGT
TCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATG
ATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGGCCAATGATACC
ATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGA
TGTTGGAAATGTTGTGATGGGTGACTGGAGGGAGAAACA
back to top