CK937752

Overview
NameCK937752
Unique NameCK937752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
[Close]
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
[Close]
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_TRYBB (60S ribosomal protein L40 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRATNCRKKGCGHCSNLRMKKKLR 52
[Close]
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_TRYCR (60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRASNCRKKACGHCSNLRMKKKLR 52
[Close]
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 296
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG I
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGGPI 105
The following BLAST results are available for this feature:
BLAST of CK937752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_LEITA8.941e-1461.5460S ribosomal protein L40 OS=Leishmania tarentolae... [more]
RL40_LEIMA8.941e-1461.5460S ribosomal protein L40 OS=Leishmania major GN=U... [more]
RL40_TRYBB2.601e-1361.5460S ribosomal protein L40 OS=Trypanosoma brucei br... [more]
RL40_TRYCR3.397e-1361.5460S ribosomal protein L40 OS=Trypanosoma cruzi GN=... [more]
ANUB1_HUMAN4.153e-1147.44AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_D03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937752 ID=CK937752; Name=CK937752; organism=Citrus sinensis; type=EST; length=740bp
GGGGAAACGAGCTAGAGAGAGAGAGAGAGAGCGAGAGGAAAAGGAGAAAA
AGGGGGAAAAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCAT
TACCCTCGAGGTCGAATCCAGCGACACCATCGACAATGTCAAGGCCAAGA
TCCAAGACAAGGAGGGTATTCCGCCGGACCAGCAGAGACTTATCTTCGCT
GGGAAGCAACTTGAGGATGGCCGTACTCTAGCCGATTACAATATCCAAAA
GGAGTCAACTCTGCATCTGGTTCTGAGGCTTCGTGGCGGTATTATTGAGC
CTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGATCTGC
CGAAAATGTTATGCACGCCTGCACCCCCGTGCCGTGAACTGCAGGAAGAA
GAAATGTGGGCACAGCAACCAGCTAAGGCCAAAGAAGAAGATCAAGTAGA
TATTCTGCAGAGAAATGCTACATTTTATACTGAAACAGGATGTTTTGCCT
AGAATATGTAGCATCAACTATTGCCCAGTAATAGTTGTCACTTAGTACGT
GATTTCTGTTTCAAGATGTTTCCAGGGTTTTGAGAGTATTTGTAGACTGA
TTACTCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTTGCGT
GAATCTACTATTTTCTTACACTGATGTTTATGCACCAATAAATTTTTCAC
TTTCATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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