CK937752

Overview
NameCK937752
Unique NameCK937752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.263e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 290
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 290
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 290
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 290
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 3
Query:   96 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 284
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 3
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK937752 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3
Query:  291 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 446
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH+NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52          
The following BLAST results are available for this feature:
BLAST of CK937752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.263e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA7.280e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP3.739e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC2.424e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE9.209e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RL40_NICSY3.275e-2498.0860S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ5.587e-2498.0860S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH5.587e-2498.0860S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA1.245e-2398.0860S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE1.165e-2188.4660S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_D03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937752 ID=CK937752; Name=CK937752; organism=Citrus sinensis; type=EST; length=740bp
GGGGAAACGAGCTAGAGAGAGAGAGAGAGAGCGAGAGGAAAAGGAGAAAA
AGGGGGAAAAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCAT
TACCCTCGAGGTCGAATCCAGCGACACCATCGACAATGTCAAGGCCAAGA
TCCAAGACAAGGAGGGTATTCCGCCGGACCAGCAGAGACTTATCTTCGCT
GGGAAGCAACTTGAGGATGGCCGTACTCTAGCCGATTACAATATCCAAAA
GGAGTCAACTCTGCATCTGGTTCTGAGGCTTCGTGGCGGTATTATTGAGC
CTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGATCTGC
CGAAAATGTTATGCACGCCTGCACCCCCGTGCCGTGAACTGCAGGAAGAA
GAAATGTGGGCACAGCAACCAGCTAAGGCCAAAGAAGAAGATCAAGTAGA
TATTCTGCAGAGAAATGCTACATTTTATACTGAAACAGGATGTTTTGCCT
AGAATATGTAGCATCAACTATTGCCCAGTAATAGTTGTCACTTAGTACGT
GATTTCTGTTTCAAGATGTTTCCAGGGTTTTGAGAGTATTTGTAGACTGA
TTACTCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTTGCGT
GAATCTACTATTTTCTTACACTGATGTTTATGCACCAATAAATTTTTCAC
TTTCATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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