CK937747 | Citrus Genome Database

Overview


Name	CK937747
Unique Name	CK937747
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	745

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.845e-54
Identity = 95/125 (76.00%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.845e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 4.087e-54
Identity = 94/125 (75.20%), Postives = 115/125 (92.00%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK++APP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 4.087e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 3.409e-53
Identity = 92/125 (73.60%), Postives = 113/125 (90.40%), Query Frame = 2

Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTFKKF++RGVDLD LLDMS +++++L+ AR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE ++THLR+MII+PEM+GS++GVYNGK FNQVEIKPEMIGHYL EFSI+YKPVKHGRPG
Sbjct:    8 KKRTFKKFTYRGVDLDQLLDMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 3.409e-53
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.283e-52
Identity = 91/127 (71.65%), Postives = 113/127 (88.98%), Query Frame = 2

Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            + KKRTF+KF++RGVDLD LLDMS ++L++L+ AR RRR  RGL+RK  +L+K+L KAK+EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEM GHYL EFSI+YKPVKHGRPG
Sbjct:    6 IKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPG 132

HSP 2 Score: 29.6462 bits (65), Expect = 1.283e-52
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  133 IGATHSSRFIPLK 145

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.033e-48
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 2

Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            L KKRTF+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPG
Sbjct:   15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPG 141

HSP 2 Score: 29.6462 bits (65), Expect = 3.033e-48
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  142 IGATHSSRFIPLK 154

The following BLAST results are available for this feature:

BLAST of CK937747 vs. ExPASy Swiss-Prot

BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
RS15_PONAB	1.845e-54	76.00	40S ribosomal protein S15 OS=Pongo abelii GN=RPS15...	[more]
RS15_PIG	1.845e-54	76.00	40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P...	[more]
RS15_MOUSE	1.845e-54	76.00	40S ribosomal protein S15 OS=Mus musculus GN=Rps15...	[more]
RS15_MESAU	1.845e-54	76.00	40S ribosomal protein S15 OS=Mesocricetus auratus ...	[more]
RS15_HUMAN	1.845e-54	76.00	40S ribosomal protein S15 OS=Homo sapiens GN=RPS15...	[more]
RS15_CHICK	1.845e-54	76.00	40S ribosomal protein S15 OS=Gallus gallus GN=RPS1...	[more]
RS15_BOVIN	4.087e-54	75.20	40S ribosomal protein S15 OS=Bos taurus GN=RPS15 P...	[more]
RS15_XENLA	3.409e-53	73.60	40S ribosomal protein S15 OS=Xenopus laevis GN=rps...	[more]
RS15_XIPMA	1.283e-52	71.65	40S ribosomal protein S15 OS=Xiphophorus maculatus...	[more]
RS15B_SCHPO	3.033e-48	68.50	40S ribosomal protein S15-B OS=Schizosaccharomyces...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG