CK937747

Overview
NameCK937747
Unique NameCK937747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.752e-48
Identity = 86/127 (67.72%), Postives = 104/127 (81.89%), Query Frame = 2
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            L KKR+F+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPG
Sbjct:   14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPG 140          

HSP 2 Score: 29.6462 bits (65), Expect = 8.752e-48
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  141 IGATHSSRFIPLK 153          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 2.527e-47
Identity = 86/127 (67.72%), Postives = 102/127 (80.31%), Query Frame = 2
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            L KKRTF+KF +RGVDLD LLDMS ++  KL   R RRR  RGLKRK +ALI K++KAK+ A   EKP  V+THLR+MII+PE++G +IG+YNGK FNQ EIKPEMIG YL EF+ISYKPVKHGRPG
Sbjct:   12 LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPG 138          

HSP 2 Score: 29.6462 bits (65), Expect = 2.527e-47
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  139 IGATHSSRFIPLK 151          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.417e-45
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = 2
Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G
Sbjct:    8 KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG 132          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.612e-45
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 2
Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK--PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGWC 532
            KKRTFKKFSFRG ++DALL MSN +L KLF+AR RRRF RGLK++P+ LIKKLR+AK+EA    K  PE V+THLRNMIIVPEMIGS++GV+NGK FN++ IKPEMIGHYLAEFS++ K V H RP  C
Sbjct:   17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRIC 145          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_DICDI (40S ribosomal protein S15 OS=Dictyostelium discoideum GN=rps15 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.843e-40
Identity = 74/126 (58.73%), Postives = 94/126 (74.60%), Query Frame = 2
Query:  152 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPP-GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKRTFKKF++ GV L++LLD+  ++L+ L   RARR+ +R    K +  +KK R +K      GEKP  V+TH RN++IVPEMIGS+IG+YNGK FNQVE+KPEMIGHY  EFS+SYK V HGRPG
Sbjct:    6 KKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPG 131          

HSP 2 Score: 29.6462 bits (65), Expect = 9.843e-40
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GATHSSRFIPLK
Sbjct:  132 IGATHSSRFIPLK 144          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS15_NAEGR (40S ribosomal protein S15 (Fragment) OS=Naegleria gruberi GN=RPS15 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.004e-28
Identity = 57/104 (54.81%), Postives = 78/104 (75.00%), Query Frame = 2
Query:  212 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRP 523
            M NDEL  LF++  RR   +G+ +K   LI+K +K +  AP GEKP+ V+THLR+MII+P MIG +IGVY GK +  VEIKPEM+G  L++FS++Y+PVKHG+P
Sbjct:    3 MENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMIILPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKP 106          

HSP 2 Score: 23.0978 bits (48), Expect = 3.004e-28
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT SS F+PLK
Sbjct:  108 IGATSSSGFVPLK 120          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F +RG  LD LL+MS +E  KL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I V+NGK F  +EIKPEMIGHYL EF+++ K V+HG PG
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPG 120          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRFU (30S ribosomal protein S19P OS=Pyrococcus furiosus GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 63/120 (52.50%), Postives = 86/120 (71.67%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F +RG  L+ L++MS +EL +LF AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPG 119          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METKA (30S ribosomal protein S19P OS=Methanopyrus kandleri GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.440e-27
Identity = 58/124 (46.77%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  155 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            ++ + +F +RG  L  L+ M  +E ++L  AR RR  +RGL  +   L++K+R+A+R    G+KP  +RTH R+MII+PEM+G  I VYNGK F +V+I+PEMIGHYL EF+ + K V+HG  G
Sbjct:   15 EKEWVEFRYRGYTLGELMKMPIEEFIELLPARQRRSLKRGLPSRHKKLLRKVRRARRLLRRGKKPPVIRTHCRDMIILPEMVGLTIAVYNGKEFKEVKIEPEMIGHYLGEFAKTRKTVEHGGIG 138          

HSP 2 Score: 23.483 bits (49), Expect = 1.440e-27
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT SS F+PLK
Sbjct:  137 IGATRSSLFVPLK 149          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F +RG  LD LL+MS +E  KL  +R RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPG 120          
The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15A_SCHPO8.752e-4867.7240S ribosomal protein S15-A OS=Schizosaccharomyces... [more]
RS15_CAEEL2.527e-4767.7240S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15_YEAST3.417e-4568.0040S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS156_ARATH7.612e-4569.7740S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]
RS15_DICDI9.843e-4058.7340S ribosomal protein S15 OS=Dictyostelium discoid... [more]
RS15_NAEGR3.004e-2854.8140S ribosomal protein S15 (Fragment) OS=Naegleria ... [more]
RS19_THEGJ4.957e-2851.6730S ribosomal protein S19P OS=Thermococcus gammato... [more]
RS19_PYRFU4.957e-2852.5030S ribosomal protein S19P OS=Pyrococcus furiosus ... [more]
RS19_METKA1.440e-2746.7730S ribosomal protein S19P OS=Methanopyrus kandler... [more]
RS19_PYRKO1.442e-2751.6730S ribosomal protein S19P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG
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