CK937747

Overview
NameCK937747
Unique NameCK937747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.720e-26
Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +KKF +RG  L+ LL+M  D+ +KL  AR RR  ++G       LI+K+RK +R++   +  +P++TH+R+++I+PEM+G    VYNGK F + ++ PEMIGHYL EFSI  + V+HG PG
Sbjct:    9 WKKFRYRGKSLEELLNMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPG 126          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.034e-25
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 2
Query:  164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +K F +RG  +D LL+M  DE +KL  +R RR  +RG       L++K+RK +RE   G+  + ++TH+RN++I+PE+IG  + VYNGK F +  + PEMIGHYL E+SI+ K V+HG PG
Sbjct:    9 WKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPG 126          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.281e-25
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F +RG  L+ L +M  D+++KLF +R RR  +RG   +   +++K+RK K+E     +P  +RTH R+MI++PEM+G   G++NGK F +V+I+PEMIG Y  EF+ + K V+HG PG
Sbjct:    4 KEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPG 123          

HSP 2 Score: 20.7866 bits (42), Expect = 1.281e-25
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+PLK
Sbjct:  124 MGATRFSMFVPLK 136          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG
Sbjct:   30 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPG 146          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 2
Query:  164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +KKF +RG  L+ LL+M  D+ ++L  AR RR  +RG       L++K+ KA++E   G+K + +RTH+R+M+I+P M+G  I VYNGK F  V+I PEMIGHYL EFS +   VKHG PG
Sbjct:    7 WKKFRYRGKTLEELLEMPLDDFIELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPG 126          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.826e-25
Identity = 52/120 (43.33%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K F ++G  L+ L DMS +E+++LF AR RR  +RG   +   ++ K+RK  +E     +P  +RTH R+MI++PEM+G+  G+YNG+ F +V I+PEMIG Y  EF+ + + V+HG PG
Sbjct:    4 KIFKYKGYTLEELQDMSLEEVMELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPG 123          

HSP 2 Score: 23.0978 bits (48), Expect = 2.826e-25
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT SS F+PLK
Sbjct:  124 MGATRSSMFVPLK 136          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +K F +RG   D L+ M  +E +KL  AR RR  +RGL+     L++K+RKAK  A  G K  PVRTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG
Sbjct:   55 WKNFKYRGFTFDELMKMPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPG 174          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 55/120 (45.83%), Postives = 85/120 (70.83%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F +RG   + L++MS ++L KL  +R RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+M+I+PEM+G +I V+NGK F  V+I+ EMIGHY+ EF+++ K V+HG PG
Sbjct:    5 KEFKYRGYTFEELINMSLEDLSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPG 120          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            F +RG  L+ LL++  DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG
Sbjct:   29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPG 145          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.143e-24
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 2
Query:  173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K+RKAK+    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG
Sbjct:   31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKVV-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPG 147          
The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METS52.720e-2645.4530S ribosomal protein S19P OS=Metallosphaera sedul... [more]
RS19_SULSO1.034e-2546.2830S ribosomal protein S19P OS=Sulfolobus solfatari... [more]
RS19_METTH1.281e-2544.1730S ribosomal protein S19P OS=Methanobacterium the... [more]
RS19_PYRAR1.763e-2551.6930S ribosomal protein S19P OS=Pyrobaculum arsenati... [more]
RS19_IGNH41.763e-2548.7630S ribosomal protein S19P OS=Ignicoccus hospitali... [more]
RS19_METS32.826e-2543.3330S ribosomal protein S19P OS=Methanobrevibacter s... [more]
RS19_CALMQ3.007e-2551.2430S ribosomal protein S19P OS=Caldivirga maquiling... [more]
RS19_THESM3.928e-2545.8330S ribosomal protein S19P OS=Thermococcus sibiric... [more]
RS19_THENV3.928e-2550.8530S ribosomal protein S19P OS=Thermoproteus neutro... [more]
RS19_PYRIL1.143e-2450.8530S ribosomal protein S19P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG
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