CK937747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.720e-26 Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = 2 Query: 164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 +KKF +RG L+ LL+M D+ +KL AR RR ++G LI+K+RK +R++ + +P++TH+R+++I+PEM+G VYNGK F + ++ PEMIGHYL EFSI + V+HG PG Sbjct: 9 WKKFRYRGKSLEELLNMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPG 126
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.034e-25 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 +K F +RG +D LL+M DE +KL +R RR +RG L++K+RK +RE G+ + ++TH+RN++I+PE+IG + VYNGK F + + PEMIGHYL E+SI+ K V+HG PG Sbjct: 9 WKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPG 126
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.281e-25 Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K+F +RG L+ L +M D+++KLF +R RR +RG + +++K+RK K+E +P +RTH R+MI++PEM+G G++NGK F +V+I+PEMIG Y EF+ + K V+HG PG Sbjct: 4 KEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPG 123 HSP 2 Score: 20.7866 bits (42), Expect = 1.281e-25 Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT S F+PLK Sbjct: 124 MGATRFSMFVPLK 136
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25 Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 2 Query: 173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 F +RG L+ LL+M DE +KL AR RR +RGLK + L++K+RKAKR A G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG Sbjct: 30 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPG 146
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25 Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 +KKF +RG L+ LL+M D+ ++L AR RR +RG L++K+ KA++E G+K + +RTH+R+M+I+P M+G I VYNGK F V+I PEMIGHYL EFS + VKHG PG Sbjct: 7 WKKFRYRGKTLEELLEMPLDDFIELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPG 126
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.826e-25 Identity = 52/120 (43.33%), Postives = 80/120 (66.67%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K F ++G L+ L DMS +E+++LF AR RR +RG + ++ K+RK +E +P +RTH R+MI++PEM+G+ G+YNG+ F +V I+PEMIG Y EF+ + + V+HG PG Sbjct: 4 KIFKYKGYTLEELQDMSLEEVMELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPG 123 HSP 2 Score: 23.0978 bits (48), Expect = 2.826e-25 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT SS F+PLK Sbjct: 124 MGATRSSMFVPLK 136
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25 Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = 2 Query: 164 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 +K F +RG D L+ M +E +KL AR RR +RGL+ L++K+RKAK A G K PVRTH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+I+ K V+HG PG Sbjct: 55 WKNFKYRGFTFDELMKMPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPG 174
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25 Identity = 55/120 (45.83%), Postives = 85/120 (70.83%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K+F +RG + L++MS ++L KL +R RR +RGL + L++K+R AK+ G+ +P+RTH R+M+I+PEM+G +I V+NGK F V+I+ EMIGHY+ EF+++ K V+HG PG Sbjct: 5 KEFKYRGYTFEELINMSLEDLSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPG 120
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25 Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 2 Query: 173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 F +RG L+ LL++ DE +KL AR RR +RGLK + L++K+RKAKR A G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG Sbjct: 29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPG 145
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.143e-24 Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 2 Query: 173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 F +RG L+ LL+M DE +KL AR RR +RGLK + L++K+RKAK+ G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+I+ K V+HG PG Sbjct: 31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKVV-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPG 147 The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bpback to top |