CK937747 | Citrus Genome Database

Overview


Name	CK937747
Unique Name	CK937747
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	745

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = 2

Query:  173 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K+RKAKR    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ + V+HG PG
Sbjct:   29 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPG 145

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.321e-24
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 2

Query:  158 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            R  K+F++RG  LD L +M  DE+ +L  AR RR   RGL  +   L++K+R   +E        P+RTHLR+M I+PE +G    VYNG +F +V+++PEMIGH+L EF ++   V+HG+ G
Sbjct:    9 REGKEFAYRGHSLDELQEMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTADN---PIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAG 128

HSP 2 Score: 25.0238 bits (53), Expect = 2.321e-24
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  129 IGATRSSKFVPLK 141

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 3.936e-24
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 2

Query:  170 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +FSFRG  LD L +M  +E+ +L  AR RR   RGL  +   L++K R+A  E    +   P+RTHLR+M +VPEM+G    V++G+ F +V+++PEM+GHYL EF ++   V+HG+ G
Sbjct:   12 EFSFRGHTLDELQEMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAG 127

HSP 2 Score: 25.0238 bits (53), Expect = 3.936e-24
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  128 IGATRSSKFVPLK 140

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METB6 (30S ribosomal protein S19P OS=Methanoregula boonei (strain 6A8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.123e-24
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 2

Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +P++R  ++F++RG  +D L  M   EL+ L  ARARR+F RGL R    L++K+R            E +RTHLR MI++PEMIG  I +YNGK F +VE +PE + HYL EF+++ K V HG  G
Sbjct:   11 MPRRR--EEFTYRGYKIDELKAMGLSELIPLMPARARRKFNRGLNRGEETLLEKIRGGD---------EKIRTHLREMIVMPEMIGKSIEIYNGKEFLKVEFQPESVFHYLGEFALTRKRVTHGSAG 126

HSP 2 Score: 22.3274 bits (46), Expect = 5.123e-24
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT  S+++PLK
Sbjct:  127 IGATRGSKYVPLK 139

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 55/123 (44.72%), Postives = 82/123 (66.67%), Query Frame = 2

Query:  170 KFSFRGVDLDALLDMSNDELVKLFSARARRR----FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KF++RG  L+ L  M  ++L ++  AR RR     F++G   + + L++K+R+A + A  G+K   ++THLR+ II+PEM+G  I V+NGK F  VEI PE IGHYL EF+++ K V+HG PG
Sbjct:    6 KFTYRGYTLEELRQMPIEKLAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPG 128

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.470e-23
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 2

Query:  170 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +F++RG  LD L +M  DE+ +L  AR RR  +RGL  +   L+ + R+A  E        P+RTHLR+M I+P  +G    VYNG++F +VE++PEMIGHYL EF ++   V+HG+ G
Sbjct:   12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAG 127

HSP 2 Score: 25.0238 bits (53), Expect = 1.470e-23
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  128 IGATRSSKFVPLK 140

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THEVO (30S ribosomal protein S19P OS=Thermoplasma volcanium GN=rps19p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.477e-23
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 2

Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+FS++G  L+ L +MS +EL+K+  ARARR   R +      L++KL         G+  + ++TH+R++II+P  +G I+ VYNG ++++ EIKPEMIGHYL EF ++ K VKH  PG
Sbjct:   28 KEFSYKGYTLEQLQEMSLEELIKILPARARRSLSREMNHDQKKLVEKLE--------GDYDD-IKTHVRDVIILPSYVGKIVEVYNGNSYSKFEIKPEMIGHYLGEFVMTRKEVKHSGPG 138

HSP 2 Score: 24.6386 bits (52), Expect = 2.477e-23
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  139 VGATRSSKFMPLK 151

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.494e-23
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 2

Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +P++R  ++F++RG  +  L  M+  EL+ L  ARARR+F RGL R+   L+  LR            E +RTHLR+MII+PEM+G  I ++NGK F +VEI+PE + HYL EF+++ + V HG  G
Sbjct:    9 MPRRR--EEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAG 124

HSP 2 Score: 23.8682 bits (50), Expect = 5.494e-23
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT SS+++PLK
Sbjct:  125 IGATRSSKYVPLK 137

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 7.138e-23
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 2

Query:  170 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ G
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAG 127

HSP 2 Score: 25.0238 bits (53), Expect = 7.138e-23
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  128 IGATRSSKFVPLK 140

[Close]

BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.138e-23
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 2

Query:  170 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ G
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAG 127

HSP 2 Score: 25.0238 bits (53), Expect = 7.138e-23
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  128 IGATRSSKFVPLK 140

The following BLAST results are available for this feature:

BLAST of CK937747 vs. ExPASy Swiss-Prot

BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
RS19_PYRCJ	1.493e-24	50.00	30S ribosomal protein S19P OS=Pyrobaculum calidifo...	[more]
RS19_HALLT	2.321e-24	43.09	30S ribosomal protein S19P OS=Halorubrum lacusprof...	[more]
RS19_HALMA	3.936e-24	43.70	30S ribosomal protein S19P OS=Haloarcula marismort...	[more]
RS19_METB6	5.123e-24	44.88	30S ribosomal protein S19P OS=Methanoregula boonei...	[more]
RS19_THEPD	7.408e-24	44.72	30S ribosomal protein S19P OS=Thermofilum pendens ...	[more]
RS19_NATPD	1.470e-23	43.70	30S ribosomal protein S19P OS=Natronomonas pharaon...	[more]
RS19_THEVO	2.477e-23	43.33	30S ribosomal protein S19P OS=Thermoplasma volcani...	[more]
RS19_METMJ	5.494e-23	43.31	30S ribosomal protein S19P OS=Methanoculleus maris...	[more]
RS19_HALSA	7.138e-23	41.18	30S ribosomal protein S19P OS=Halobacterium salina...	[more]
RS19_HALS3	7.138e-23	41.18	30S ribosomal protein S19P OS=Halobacterium salina...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG