CK937747

Overview
NameCK937747
Unique NameCK937747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_HALWD (30S ribosomal protein S19P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps19p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.289e-23
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  170 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKP-EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +F++RG  LD L  MS +++  L  AR RR  +RGL  +     +KLR+  R+A P +   +P+RTHLR+M I+P  +   I VYNG++F +V I+PEMIGHYL EF ++   V+HG+ G
Sbjct:   12 EFTYRGHTLDELQAMSLEDITALLPARQRRTIERGLTTEQ----QKLRETVRDADPQKTANDPIRTHLRDMPILPSFVEKTIAVYNGQSFERVRIEPEMIGHYLGEFQLTRTSVEHGQAG 127          

HSP 2 Score: 25.0238 bits (53), Expect = 9.289e-23
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  128 IGATRSSKFVPLK 140          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.203e-22
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+FS+RG  L+ L +M  +EL+ L  ARARR + R +  +   L +KL         G+K E ++TH+R++I++P+ +G  I +YNG ++ + EIKPEMIGHYL EF+++ K VKH  PG
Sbjct:   28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPG 138          

HSP 2 Score: 25.0238 bits (53), Expect = 1.203e-22
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  139 VGATRSSKFLPLK 151          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.213e-22
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            ++F +RG  L+ L  M+ DEL  +  +R RR  +RGL  +   L+ K+RK K         + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG
Sbjct:    4 REFRYRGYTLEQLQTMTLDELANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPG 119          

HSP 2 Score: 23.8682 bits (50), Expect = 1.213e-22
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  528 GATHSSRFIPLK 563
            GAT SS+F+PLK
Sbjct:  121 GATRSSKFVPLK 132          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_ARCFU (30S ribosomal protein S19P OS=Archaeoglobus fulgidus GN=rps19p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.054e-22
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            + F +RG  L+ L  M  +EL KL  AR RR+ +RG   +   L++KLRK              RTH R+M+++PEM+G ++ V+NGK F +VEIKPEMIGH L EF+++ +  KH  PG
Sbjct:   11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKLRKKGT----------ARTHCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPG 120          

HSP 2 Score: 24.2534 bits (51), Expect = 2.054e-22
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+++PLK
Sbjct:  121 VGATRSSKYVPLK 133          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.448e-22
Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F+++G  L+ L  MS +EL+K+  ARARR   R    +   L++KL   +         E V+TH+R++II+P  +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH  PG
Sbjct:   28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLESDE---------EDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPG 138          

HSP 2 Score: 24.6386 bits (52), Expect = 3.448e-22
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  139 VGATRSSKFMPLK 151          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_META3 (30S ribosomal protein S19P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps19p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.566e-22
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 2
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            P++R   +F ++G  L  L +M   + +++  AR RR  ++G+  K   L+ K++KA+R A  G+ P  +RTH R+ +I PEMIG   G+YNGK F +V++  E IG +L EF+ S K V+HG PG
Sbjct:   26 PRRRV--EFKYKGFTLGELQEMPIKKFMEIVPARQRRSMKKGITPKQRKLVMKIKKARRLANRGKDPRTIRTHCRDFVITPEMIGLPFGIYNGKEFIEVKLVEEAIGRFLGEFAPSRKVVQHGSPG 149          

HSP 2 Score: 20.7866 bits (42), Expect = 7.566e-22
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+P+K
Sbjct:  150 MGATRGSMFVPIK 162          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.678e-22
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            KKF +RG   + L  M  D L +LF++R RR   RG+      LI++++ A+     G++  P++THLR++I++P M G  + V++GK F  VEI  EMIGHYL E+ I+ K V HG PG
Sbjct:    3 KKFEYRGKPAEELESMPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPG 118          

HSP 2 Score: 21.1718 bits (43), Expect = 7.678e-22
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            VGA+ SS ++PLK
Sbjct:  119 VGASRSSLYVPLK 131          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.950e-22
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K F FRG  L+ L +MS DE+++L  +R RR  +RG   +   ++ K+ K K       +P  ++TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y  EF+ +   V+HG PG
Sbjct:    4 KIFKFRGYTLEELQEMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPG 123          

HSP 2 Score: 23.0978 bits (48), Expect = 9.950e-22
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT SS F+PLK
Sbjct:  124 MGATRSSMFVPLK 136          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F ++G  L  L  MS +EL K+  AR RR   R LK       KKL K    A  G+  +P++TH RN II+P M+G  + VYNGK +  V+IKPEMIGHYL EFS + K  KH  PG
Sbjct:    8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPG 127          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.710e-21
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LPK++  ++F++RG  +  L  M  +E+ +L  +R RR  +RGL ++    + KLR A+  A         +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++   V HG  G
Sbjct:    9 LPKRK--EEFTYRGYRVSELAKMRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLR-ARGTA---------KTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAG 123          

HSP 2 Score: 25.409 bits (54), Expect = 3.710e-21
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  124 VGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_HALWD9.289e-2344.1730S ribosomal protein S19P OS=Haloquadratum walsby... [more]
RS19_PICTO1.203e-2243.3330S ribosomal protein S19P OS=Picrophilus torridus... [more]
RS19_KORCO1.213e-2244.1730S ribosomal protein S19P OS=Korarchaeum cryptofi... [more]
RS19_ARCFU2.054e-2243.3330S ribosomal protein S19P OS=Archaeoglobus fulgid... [more]
RS19_THEAC3.448e-2243.3330S ribosomal protein S19P OS=Thermoplasma acidoph... [more]
RS19_META37.566e-2240.4830S ribosomal protein S19P OS=Methanococcus aeolic... [more]
RS19_CENSY7.678e-2242.5030S ribosomal protein S19P OS=Cenarchaeum symbiosu... [more]
RS19_METST9.950e-2240.8330S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_NANEQ1.183e-2147.5030S ribosomal protein S19P OS=Nanoarchaeum equitan... [more]
RS19_METTP3.710e-2140.1630S ribosomal protein S19P OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG
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