CK937747

Overview
NameCK937747
Unique NameCK937747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937747_ssr130 microsatellite CK937747_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2117 contig Csv1_Contig2117:5..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.846e-21
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 2 
Query:  167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            K+F++RG+  + L +MS ++L +LF+AR RR   RG+      LI++++ AK     G+   P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG
Sbjct:    3 KEFAYRGIPKEELDNMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPG 118

HSP 2 Score: 21.1718 bits (43), Expect = 4.846e-21
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGA+ SS ++PLK
Sbjct:  119 VGASRSSLYVPLK 131
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.340e-20
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LPK++   +++FRG  +  L +MS ++  +L  A+ RR  +RG       ++++ R  K         E VRTH RNMII PEMIG  + VYNGK F ++EI PEMIGH   E+S +   V HG  G
Sbjct:    9 LPKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAG 124

HSP 2 Score: 25.409 bits (54), Expect = 2.340e-20
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  125 VGATRSSKFVPLK 137
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.122e-19
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPG 148

HSP 2 Score: 20.7866 bits (42), Expect = 1.122e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+P+K
Sbjct:  149 MGATRGSMFVPIK 161
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.469e-19
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+  K   L+ K++KA+R    G++   +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPG 148

HSP 2 Score: 20.7866 bits (42), Expect = 2.469e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+P+K
Sbjct:  149 MGATRGSMFVPIK 161
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.176e-19
Identity = 44/126 (34.92%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+  K   L+ K++KA+R    G+    +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG
Sbjct:   25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPG 148

HSP 2 Score: 20.7866 bits (42), Expect = 4.176e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+P+K
Sbjct:  149 MGATRGSMFVPIK 161
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.176e-19
Identity = 45/126 (35.71%), Postives = 74/126 (58.73%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F  V +  E +G +L E + +   V+HG PG
Sbjct:   25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPG 148

HSP 2 Score: 20.7866 bits (42), Expect = 4.176e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+P+K
Sbjct:  149 MGATRGSMFVPIK 161
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.187e-19
Identity = 44/126 (34.92%), Postives = 74/126 (58.73%), Query Frame = 2 
Query:  149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            P++R   +F ++G  L  L +M   + +++  AR RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG
Sbjct:   24 PRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPG 147

HSP 2 Score: 20.7866 bits (42), Expect = 9.187e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GAT  S F+P+K
Sbjct:  148 MGATRGSMFVPIK 160
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.571e-18
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LP+++  ++F++ G  +D L  MS ++L+ +  +RARR+  RG       L+  +R              +RTH R+MII+PEMIG  I +YNGK F +VE++PE + HYL EF+++ + V HG  G
Sbjct:    9 LPRRK--EEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAG 124

HSP 2 Score: 25.0238 bits (53), Expect = 1.571e-18
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            +GAT SS+F+PLK
Sbjct:  125 IGATRSSKFVPLK 137
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.844e-18
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I V+NGK F  VE++PEMIGH   EF+ +   V HG  G
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAG 123

HSP 2 Score: 25.409 bits (54), Expect = 5.844e-18
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  124 VGATRSSKFVPLK 136
[Close]
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.671e-17
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 2 
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I ++NGK F  V+++PEM+GH   EF+ +   V HG  G
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAG 123

HSP 2 Score: 25.409 bits (54), Expect = 1.671e-17
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  124 VGATRSSKFVPLK 136
The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_NITMS4.846e-2140.8330S ribosomal protein S19P OS=Nitrosopumilus marit... [more]
RS19_METBU2.340e-2040.9430S ribosomal protein S19P OS=Methanococcoides bur... [more]
RS19_METM71.122e-1934.9230S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM52.469e-1934.9230S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METMP4.176e-1934.9230S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM64.176e-1935.7130S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS9.187e-1934.9230S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METHJ1.571e-1837.8030S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_METMA5.844e-1837.0130S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METAC1.671e-1734.6530S ribosomal protein S19P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG
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