CK937747

Overview
NameCK937747
Unique NameCK937747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METBF (30S ribosomal protein S19P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps19p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.173e-17
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ + ++ K+          VRTH R++II+PEMIG  I ++NGK F  V+++PEMIGH   EF+ +   V HG  G
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------VRTHHRDLIILPEMIGQTIEIHNGKGFVSVDLQPEMIGHRFGEFAPTRSRVSHGSAG 123          

HSP 2 Score: 25.409 bits (54), Expect = 2.173e-17
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            VGAT SS+F+PLK
Sbjct:  124 VGATRSSKFVPLK 136          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.768e-17
Identity = 42/127 (33.07%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            LPK++  ++F++RG+ +  +  +  +++  L  AR RR+ +R    +   L+  ++  + +         ++THLR+MII+PEM+G    ++NGK +  VE  PEM+GHYL EF+++   V HG  G
Sbjct:   12 LPKRK--EEFTYRGLTIAEMKKLDMNQVAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAG 127          

HSP 2 Score: 22.3274 bits (46), Expect = 4.768e-17
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT  S+++PLK
Sbjct:  128 IGATRGSKYVPLK 140          
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METLZ (30S ribosomal protein S19P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps19p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.777e-17
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526
            +PK+R  +++++ G +++ L  MS DEL+ +  + ARR+  RG  R    +  K+ +           + VRTH R+MII+PEM+G  + +Y+GK F  VEI  E + HY  EF+++ K V HG  G
Sbjct:    9 MPKRR--EEYTYHGYNIEQLKAMSMDELLAIMPSGARRKVLRGFTRDEEDVRAKIAEG----------DGVRTHSRSMIILPEMVGKNVAIYSGKEFINVEIPVEGVFHYFGEFALTRKKVTHGSAG 123          

HSP 2 Score: 23.483 bits (49), Expect = 4.777e-17
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  525 VGATHSSRFIPLK 563
            +GAT SS+++PLK
Sbjct:  124 IGATKSSKYVPLK 136          
The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METBF2.173e-1735.4330S ribosomal protein S19P OS=Methanosarcina barke... [more]
RS19_UNCMA4.768e-1733.0730S ribosomal protein S19P OS=Uncultured methanoge... [more]
RS19_METLZ4.777e-1736.2230S ribosomal protein S19P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_C09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bp
GGGGCTTCTCCTCACATTAAAAAACCCTAGCGGCATCAGATCCAGCGGGA
NNNTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCTCTAACC
ATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGGACTGCC
GAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATTTGGACG
CTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGTGCACGT
GCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGCTTTGAT
CAAGAAGCTTCGCAAGGCGAAAAGGGAGGCTCCGCCTGGTGAGAAGCCTG
AACCAGTTCGCACCCATTTGCGAAACATGATCATTGTTCCTGAAATGATT
GGAAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAAT
CAAGCCGGAAATGATTGGGCATTACCTGGCTGAGTTCTCTATCTCATACA
AGCCTGTGAAGCACGGTAGACCTGGTTGGTGCTACCCATTCCTCAAGGTT
CATTCCTCTTAAGTGAGATGTATGCTGGATATCTGGAATTTTAGCTTATT
GTTATTTTCAGAAAACATTGAAGTTGATCAAATTTTTTGTGGTTACATTT
TTTTGGTTGTTGGACTAAATACTAGCGTTTGAGTTGTTAATCTAGATAAT
GGAACTAATGTGTAGTTTAAAGAGGTGTTATGTGGCTTGGATATG
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