CK937747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METBF (30S ribosomal protein S19P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps19p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.173e-17 Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 LPK++ ++++RG + L ++S +E +L +R RR +RG ++ + ++ K+ VRTH R++II+PEMIG I ++NGK F V+++PEMIGH EF+ + V HG G Sbjct: 9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------VRTHHRDLIILPEMIGQTIEIHNGKGFVSVDLQPEMIGHRFGEFAPTRSRVSHGSAG 123 HSP 2 Score: 25.409 bits (54), Expect = 2.173e-17 Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 VGAT SS+F+PLK Sbjct: 124 VGATRSSKFVPLK 136
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.768e-17 Identity = 42/127 (33.07%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 LPK++ ++F++RG+ + + + +++ L AR RR+ +R + L+ ++ + + ++THLR+MII+PEM+G ++NGK + VE PEM+GHYL EF+++ V HG G Sbjct: 12 LPKRK--EEFTYRGLTIAEMKKLDMNQVAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAG 127 HSP 2 Score: 22.3274 bits (46), Expect = 4.768e-17 Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT S+++PLK Sbjct: 128 IGATRGSKYVPLK 140
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METLZ (30S ribosomal protein S19P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps19p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.777e-17 Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 +PK+R +++++ G +++ L MS DEL+ + + ARR+ RG R + K+ + + VRTH R+MII+PEM+G + +Y+GK F VEI E + HY EF+++ K V HG G Sbjct: 9 MPKRR--EEYTYHGYNIEQLKAMSMDELLAIMPSGARRKVLRGFTRDEEDVRAKIAEG----------DGVRTHSRSMIILPEMVGKNVAIYSGKEFINVEIPVEGVFHYFGEFALTRKKVTHGSAG 123 HSP 2 Score: 23.483 bits (49), Expect = 4.777e-17 Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT SS+++PLK Sbjct: 124 IGATKSSKYVPLK 136 The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bpback to top |