CK937746

Overview
NameCK937746
Unique NameCK937746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 51/89 (57.30%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  227 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FL++ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 49/92 (53.26%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  218 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            D    +  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR     F++    ++K++IK+HGF
Sbjct:   17 DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  245 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N   +L ++G+ K E +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.693e-24
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  245 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N   +L + G+ K + +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
The following BLAST results are available for this feature:
BLAST of CK937746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE2.524e-2860.67Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA2.524e-2860.67Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN2.524e-2860.67Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB2.791e-2758.43Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN2.791e-2758.43Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN2.791e-2758.43Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE3.645e-2757.30Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_YEAST9.926e-2553.26Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ANOGA9.926e-2560.24Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME1.693e-2459.04Protein translation factor SUI1 homolog OS=Drosoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_E11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937746 ID=CK937746; Name=CK937746; organism=Citrus sinensis; type=EST; length=600bp
GGGGGTCACCAAGAACGAGCTTCAGACTTATACGAATCCGATTTAGGGTT
TCTTTTTGATCTTATCAGATCGGACTATCTCGATTATTAAACCCTAATCT
ACGGATCAGGTCTGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAG
GTTCATGTCTGATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTG
CTGATGCAAAGGCTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCAT
ATCCGTGTTCAGCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGG
GTTGAAGAAAGAATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGG
AATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTC
ATTCAACTCCAAGGTGACCAGCGGAAGAATGCATCTACGTTCCTTGTTCA
GGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAA
ACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAG
TGCAGAACATGCTATTGATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top