CK937746

Overview
NameCK937746
Unique NameCK937746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.888e-24
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  218 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            D  A S  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CNG +V+D E+G++IQLQGDQR     FL+    + K++IK+HGF
Sbjct:   17 DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.926e-24
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  218 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            D  A     +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR     FL Q   ++K++IK+HGF
Sbjct:   18 DDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CK937746 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.585e-22
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  257 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKEHIKMHGF 493
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN   FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CK937746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_ASHGO2.888e-2454.35Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_SCHPO4.926e-2457.61Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK1.585e-2258.23Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937746 ID=CK937746; Name=CK937746; organism=Citrus sinensis; type=EST; length=600bp
GGGGGTCACCAAGAACGAGCTTCAGACTTATACGAATCCGATTTAGGGTT
TCTTTTTGATCTTATCAGATCGGACTATCTCGATTATTAAACCCTAATCT
ACGGATCAGGTCTGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAG
GTTCATGTCTGATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTG
CTGATGCAAAGGCTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCAT
ATCCGTGTTCAGCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGG
GTTGAAGAAAGAATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGG
AATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTC
ATTCAACTCCAAGGTGACCAGCGGAAGAATGCATCTACGTTCCTTGTTCA
GGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAA
ACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAG
TGCAGAACATGCTATTGATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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