CK937739

Overview
NameCK937739
Unique NameCK937739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.086e-44
Identity = 108/251 (43.03%), Postives = 150/251 (59.76%), Query Frame = 3 
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWAK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            R+  V GNWK +GT   V ++   L+                  LF+  V   L   +  V AQN   + + GA TGE++ E LV  G   V++GHSERR ++ E++E +  K A A ++GLK + C+GETLE+REAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTEGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALNS (Triosephosphate isomerase OS=Salmonella newport (strain SL254) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3 
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
The following BLAST results are available for this feature:
BLAST of CK937739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEPG1.086e-4443.03Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_SALTY1.418e-4444.13Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALSV1.418e-4444.13Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK1.418e-4444.13Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB1.418e-4444.13Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA1.418e-4444.13Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALNS1.418e-4444.13Triosephosphate isomerase OS=Salmonella newport (s... [more]
TPIS_SALHS1.418e-4444.13Triosephosphate isomerase OS=Salmonella heidelberg... [more]
TPIS_SALG21.418e-4444.13Triosephosphate isomerase OS=Salmonella gallinarum... [more]
TPIS_SALEP1.418e-4444.13Triosephosphate isomerase OS=Salmonella enteritidi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937739 ID=CK937739; Name=CK937739; organism=Citrus sinensis; type=EST; length=789bp
GGGGATAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAG
TTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAA
AAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCG
TTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGT
TCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGCCAAGAA
GGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGG
GTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAAT
GAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGG
TTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAG
GATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGA
GTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTAT
TGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTG
AACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCA
ACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATT
GGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGA
AGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
back to top