CK937739

Overview
NameCK937739
Unique NameCK937739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 145/247 (58.70%), Query Frame = 3
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 111/251 (44.22%), Postives = 147/251 (58.57%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWAKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            R+  V GNWK +GT   V ++++ L                   L++  V   L+     V AQN   +   GA TGEI+   LV+ G   V++GHSERRLI+ E +  +  K A A + GLK + CVGETLEQREAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELINGLRH--LALPSGVDVAVFPPCLYINQVIDGLKGKSIQVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 109/247 (44.13%), Postives = 144/247 (58.30%), Query Frame = 3
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHV-AAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               ++L L K +      +  AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+EF+  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    ++A    I YGGSVN +N  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVTGCAVAIAPPDMYLDLAKHAADGSHIILGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_BACC7 (Triosephosphate isomerase OS=Bacillus cereus (strain AH187) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 112/240 (46.67%), Postives = 137/240 (57.08%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 755
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_BACC0 (Triosephosphate isomerase OS=Bacillus cereus (strain AH820) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 112/240 (46.67%), Postives = 137/240 (57.08%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 755
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_BACAN (Triosephosphate isomerase OS=Bacillus anthracis GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.853e-44
Identity = 112/240 (46.67%), Postives = 137/240 (57.08%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 755
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEVVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_MARAV (Triosephosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.420e-44
Identity = 106/250 (42.40%), Postives = 140/250 (56.00%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 779
            R+  V GNWK NG+ + VK++V  + E                 ++L  V           AQN    + GA+TGEISAEM  ++G  +V++GHSERR +  E++     KV   L  GL  + CVGETL +REA     VVA Q ++    +AD    WS +V+AYEPVWAIGTGK AT   AQ +H E+RK L    +P  A    ++YGGSV   N   L A+PD+DG L+GGASLK  EFI I +S
Sbjct:    2 RRRIVAGNWKMNGSKDLVKQLVGAVREQSGSVGEDVEVVIIPPAIYLDQVAEQGGGRITTGAQNVSQWQSGAYTGEISAEMARDMGCGYVLVGHSERRQLFGETDSVAAAKVEQVLLSGLVAVLCVGETLAEREADQAEAVVAEQVRSGLSVVAD--GQWSRVVVAYEPVWAIGTGKTATADDAQAMHSEIRKVLDGMNAP--ANEISVLYGGSVKADNAAALFAEPDIDGGLIGGASLKAEEFISICRS 247          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_LACH4 (Triosephosphate isomerase OS=Lactobacillus helveticus (strain DPC 4571) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.420e-44
Identity = 100/242 (41.32%), Postives = 141/242 (58.26%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 758
            M R   + GNWK +  PE+  + V  + +                     L K++   + H+ A+NC+ +  GA+TGE S ++L  +GI +VI+GHSERR   +E++E +  K     + GLK I C GE+LE REA    D V  Q KA  D +++   SN+V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGSV  AN KEL ++PD+DG LVGGASLKPE
Sbjct:    1 MSRTPIIAGNWKLHMNPEQTAEFVDAVKDKLPDPSKVESLICAPAVDLDALRKAAKGSNLHIGAENCYFEDEGAYTGETSPKVLKEMGIDYVIIGHSERRGYFHETDEDINKKAKAIFANGLKPIICCGESLETREANKQEDWVVGQIKAALDGLTAEQVSNLVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLKPE 242          
The following BLAST results are available for this feature:
BLAST of CK937739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALDC1.418e-4444.13Triosephosphate isomerase OS=Salmonella dublin (st... [more]
TPIS_SALCH1.418e-4444.13Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA41.418e-4444.13Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_PSEF51.418e-4444.22Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_ENTCL1.418e-4444.13Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_BACC71.418e-4446.67Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC01.418e-4446.67Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACAN1.853e-4446.67Triosephosphate isomerase OS=Bacillus anthracis GN... [more]
TPIS_MARAV2.420e-4442.40Triosephosphate isomerase OS=Marinobacter aquaeole... [more]
TPIS_LACH42.420e-4441.32Triosephosphate isomerase OS=Lactobacillus helveti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937739 ID=CK937739; Name=CK937739; organism=Citrus sinensis; type=EST; length=789bp
GGGGATAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAG
TTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAA
AAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCG
TTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGT
TCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGCCAAGAA
GGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGG
GTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAAT
GAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGG
TTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAG
GATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGA
GTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTAT
TGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTG
AACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCA
ACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATT
GGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGA
AGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
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