CK937739

Overview
NameCK937739
Unique NameCK937739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.420e-44
Identity = 110/254 (43.31%), Postives = 147/254 (57.87%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVA--AQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 785
            M R+  V GNWK NG+    K++++ L + +               ++L   +++L     +A  AQN      GAFTG+IS EML + G  ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+AE
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP7 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.420e-44
Identity = 110/254 (43.31%), Postives = 147/254 (57.87%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVA--AQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 785
            M R+  V GNWK NG+    K++++ L + +               ++L   +++L     +A  AQN      GAFTG+IS EML + G  ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+AE
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.420e-44
Identity = 110/254 (43.31%), Postives = 147/254 (57.87%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVA--AQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 785
            M R+  V GNWK NG+    K++++ L + +               ++L   +++L     +A  AQN      GAFTG+IS EML + G  ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+AE
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.160e-44
Identity = 108/251 (43.03%), Postives = 150/251 (59.76%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWAK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            R+  V GNWK +GT   V ++   L+                  LF+  V   L   +  V AQN   + + GA TGE++ E LV  G   V++GHSERR I+ E++E +  K A A ++GLK + C+GETLE+REAG T++VV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTKGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.160e-44
Identity = 108/251 (43.03%), Postives = 150/251 (59.76%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWAK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            R+  V GNWK +GT   V ++   L+                  LF+  V   L   +  V AQN   + + GA TGE++ E LV  G   V++GHSERR I+ E++E +  K A A ++GLK + C+GETLE+REAG T++VV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTKGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.160e-44
Identity = 108/251 (43.03%), Postives = 143/251 (56.97%), Query Frame = 3
Query:   45 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFL--GLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            R+  V GNWK NG+      +++ +  G               +     GL+  +      + AQ+  + + GA+TGE+S  ML      +VI+GHSERR    E+NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATPA AQEVH  LRK L A  + E A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+ +A
Sbjct:    2 RRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGAA---IALGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.127e-44
Identity = 108/247 (43.72%), Postives = 144/247 (58.30%), Query Frame = 3
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVK-SSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 785
            V GNWK NG+   V ++V+ L + +               +++ L K ++      + AQN      GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q   +      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDTVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.127e-44
Identity = 102/246 (41.46%), Postives = 136/246 (55.28%), Query Frame = 3
Query:   57 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSAE 785
            V GNWK NGT E V  ++  +                       +          + AQ+      GAFTGE S  M+   G  + ++GHSERR   NE++  V  K     + GL  + C+GETLE+RE   T +VV  Q KA+ D   + +  N V+AYEPVWAIGTGKVA+  QAQ+VH  +R WL A  S  +AA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A+
Sbjct:    6 VMGNWKLNGTKESVSALIKGIEAAADAAKNVEVAVCPPTIFIEQVANLVANNSIELGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWL-AEQSKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGAK 250          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.127e-44
Identity = 109/260 (41.92%), Postives = 148/260 (56.92%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL---------RPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            M R+  V GNWK NG+    K+++  L + +               ++LG  +++L         +    + AQN      GAFTG+IS+EML + G  ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIEGL-KAELHDVTGCDVAIAPPVMYLGTAEAALSGCGCSCGGKSVIQLGAQNVDINVKGAFTGDISSEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of CK937739 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.127e-44
Identity = 109/260 (41.92%), Postives = 148/260 (56.92%), Query Frame = 3
Query:   39 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL---------RPDFHVAAQNCWAKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 782
            M R+  V GNWK NG+    K+++  L + +               ++LG  +++L         +    + AQN      GAFTG+IS+EML + G  ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIEGL-KAELHDVTGCDVAIAPPVMYLGTAEAALSGCGCSCGGKSVIQLGAQNVDINVKGAFTGDISSEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
The following BLAST results are available for this feature:
BLAST of CK937739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACTPJ2.420e-4443.31Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP72.420e-4443.31Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP22.420e-4443.31Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_PSEPK3.160e-4443.03Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP13.160e-4443.03Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_JANMA3.160e-4443.03Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_SALTI4.127e-4443.72Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]
TPIS_PSYIN4.127e-4441.46Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_HAEIG4.127e-4441.92Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI84.127e-4441.92Triosephosphate isomerase OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937739 ID=CK937739; Name=CK937739; organism=Citrus sinensis; type=EST; length=789bp
GGGGATAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAG
TTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAA
AAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCG
TTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGT
TCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGCCAAGAA
GGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGG
GTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAAT
GAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGG
TTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAG
GATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGA
GTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTAT
TGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTG
AACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCA
ACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATT
GGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGA
AGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGA
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