CK937738

Overview
NameCK937738
Unique NameCK937738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 111/219 (50.68%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 111/219 (50.68%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 111/219 (50.68%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 111/219 (50.68%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 112/219 (51.14%), Postives = 144/219 (65.75%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  E AP +  KN T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMESAPDLNPKNFTAMLRLDHNRALSQLSLKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS----IGDAINDQEW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 110/219 (50.23%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 110/219 (50.23%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 110/219 (50.23%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 110/219 (50.23%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 110/219 (50.23%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAW 215          
The following BLAST results are available for this feature:
BLAST of CK937738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_ACIBT1.485e-5350.68Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBC1.485e-5350.68Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB51.485e-5350.68Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB31.485e-5350.68Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_XANCB1.939e-5351.14Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_MYCTU1.939e-5350.23Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA1.939e-5350.23Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT1.939e-5350.23Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP1.939e-5350.23Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO1.939e-5350.23Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937738 ID=CK937738; Name=CK937738; organism=Citrus sinensis; type=EST; length=735bp
GGGGATCGAAGTTCTCCTTCTCCCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGCATGGT
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