CK937738

Overview
NameCK937738
Unique NameCK937738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XANOP (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mdh PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 109/219 (49.77%), Postives = 143/219 (65.30%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +   N T + RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPNNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS----IGDAINDQEW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.237e-52
Identity = 110/219 (50.23%), Postives = 144/219 (65.75%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    ++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW
Sbjct:    2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52
Identity = 108/219 (49.32%), Postives = 145/219 (66.21%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFP + GV    DA +   GVN+A++VG  PR  GMER D++S N +I+ AQ  AL + AA + ++ V  NPANTNALI    AP IP    + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPDV HA +    G +   E+V D  W
Sbjct:    1 MSSTPLKVAVTGAAGQIGYSLLFRLASGSLLG-DRPIELRLLEITPALKALEGVVMELDDCAFPNLAGVQIGDDAEQIFDGVNLALLVGARPRGPGMERGDLLSANGAIFTAQGKALNKVAADDVRIGVTGNPANTNALIAMTNAPDIPQARFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI----GGRNAAEVVGDQDW 214          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.815e-51
Identity = 105/215 (48.84%), Postives = 139/215 (64.65%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            PV V VTGAAGQI Y L+  IA G MLG   P+ L +L+IP A  +L GV MEL D AFPL+  +  + D      G N+A++VG  PR  GMER D+++ N  I+  Q  A+   AA + KVLVV NPANTNA I    AP +PA+  T +TRLDHNRA+ Q+++K     +++  + +WGNHS++QYPD+ HATV   AG +P RELV D+ W
Sbjct:    9 PVTVTVTGAAGQIAYGLLFRIASGAMLGPHTPIRLRLLEIPAAVASLEGVAMELEDGAFPLLDAIDISDDPWTGFAGANVALLVGARPRTAGMERADLLAANGPIFTDQGQAINAVAADDVKVLVVGNPANTNAFIAMSNAPDVPAERFTAMTRLDHNRAIAQLAKKTGAPATEIHRIAVWGNHSATQYPDLTHATV---AG-RPARELV-DEQW 218          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.370e-51
Identity = 107/221 (48.42%), Postives = 145/221 (65.61%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P     +AL GV MEL D AFPL+  + A +D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+ + +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  QI+ K    V+D++ + +WGNHS + Y D   AT+    G + V +++ D  W
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLVEMTAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRDVRVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLTVWGNHSPTMYADYRFATI----GGESVAQMINDQEW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 110/219 (50.23%), Postives = 142/219 (64.84%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    + A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL   V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 110/219 (50.23%), Postives = 142/219 (64.84%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    + A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL   V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 106/221 (47.96%), Postives = 143/221 (64.71%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK+PVRV VTGAAGQIGYAL+  +A G MLG DQP+IL ML++P      AL GV MEL D AFPL+  ++ T D   A    + A++VG  PR  GMERKD++ +N  I+  Q  A+   A+ + +V+VV NPANTNA I  + AP +P  N T + RLDHNRA  Q++ +    V+ V+ +I+WGNHS + YPD+   TV+     +P  +LV D+AW
Sbjct:    1 MAKKPVRVTVTGAAGQIGYALLFRVASGQMLGPDQPIILQMLELPIDKVQAALKGVMMELEDCAFPLLADMIGTGDPKVAFKDSDYALLVGARPRGPGMERKDLLLENAKIFIEQGKAMNAVASRDIRVIVVGNPANTNAWIAMKSAPDLPKGNFTAMLRLDHNRAKSQLATRTGKPVASVEKMIVWGNHSPTMYPDIRFCTVD----GQPAVKLVNDEAW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_LARHH (Malate dehydrogenase OS=Laribacter hongkongensis (strain HLHK9) GN=mdh PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            PVRV VTGAAGQIGY+L+  IA G MLG +QPVIL +LD+P A  A+ GV MEL D AFPL+ G+VAT D   A    +I ++VG  PR +GMER D++  N +I+  Q  A+ ++A  + KVLVV NPANTNA I ++ A  +    PA N T + RLDHNRAL Q++ K    V+ ++N+ +WGNHS + Y D   ATVN   GE  V+ ++ D+AW
Sbjct:    4 PVRVAVTGAAGQIGYSLLFRIASGEMLGQNQPVILQLLDLPQAQNAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADICLLVGARPRSKGMERADLLEANGAIFTVQGKAIAENAKEDVKVLVVGNPANTNAYIARKAAEKVGRTNPA-NYTAMLRLDHNRALSQLAAKTGKAVASIENMAVWGNHSPTMYADYRFATVN---GES-VKSMINDEAW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.896e-51
Identity = 102/215 (47.44%), Postives = 133/215 (61.86%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IPPA  A  G  MEL D+AFPL+  V    D      G ++A+++G  PR +GMER D+++ N  I+  Q  A+ Q AA   +VLVV NPANTNAL+    AP +PA+  T LTRLDHNRA+ Q++      V D+  V IWGNHSS+QYPD+ HA V    G++   ++  D  W
Sbjct:    7 PAVVTVTGAAGSIGYAALFRIAAGAMLGPDTPIRLRLLEIPPAVSAAEGTAMELDDSAFPLLLDVEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRAINQVAADGVRVLVVGNPANTNALVAANNAPDVPAERFTALTRLDHNRAIAQLARHSGAAVRDISRVTIWGNHSSTQYPDIFHARV----GDRSGADIAADREW 217          
The following BLAST results are available for this feature:
BLAST of CK937738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_XANOP4.776e-5249.77Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XYLFA6.237e-5250.23Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_NOCSJ8.146e-5249.32Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_NOCFA1.815e-5148.84Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDH_POLNA2.370e-5148.42Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH_XYLFT3.096e-5150.23Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLF23.096e-5150.23Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_SYNFM3.096e-5147.96Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_LARHH3.096e-5149.77Malate dehydrogenase OS=Laribacter hongkongensis (... [more]
MDH_RHOOB6.896e-5147.44Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937738 ID=CK937738; Name=CK937738; organism=Citrus sinensis; type=EST; length=735bp
GGGGATCGAAGTTCTCCTTCTCCCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGCATGGT
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