CK937738

Overview
NameCK937738
Unique NameCK937738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.607e-58
Identity = 114/219 (52.05%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M + PV V VTGAAGQIGYAL+  IA G ++G D PV L +L+IP A +A  G  MEL D AFPL++G+  T DA  A  G N+A++VG  PR +GMER D++  N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++KL V V+D+K + IWGNHS++QYPD+ HA VN     + V     D AW
Sbjct:    1 MTQAPVTVTVTGAAGQIGYALLFRIASGQLIGPDTPVRLRLLEIPQAVKAAEGTAMELDDCAFPLLQGIEVTDDARTAFDGTNVALLVGARPRTKGMERGDLLEANGGIFKPQGEAINAGAADDVRVLVVGNPANTNALIAQAHAPDVPAERFTAMTRLDHNRALTQLAQKLGVSVNDIKKLTIWGNHSATQYPDLFHAEVNGKVAAEQV-----DQAW 214          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + AP++P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+     + V++L+ D  W
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQQAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATVD----GQSVKDLINDPVW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 115/222 (51.80%), Postives = 151/222 (68.02%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS---IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPL+ G++AT D   A     +A++VG  PR  GMERKD++++N  I+  Q +A+ Q+A P+CKVLVV NP NTNA I KE A     +PAKN T + RLDHNRAL Q++ K   +VS +KN+++WGNHS + Y D      N  +    V++L+ D AW
Sbjct:    1 MSKAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQKAVKGVMMELEDCAFPLLAGMIATDDPNVAFKDAKVALLVGARPRGPGMERKDLLTENAKIFTVQGAAIGQYADPDCKVLVVGNPCNTNAYIAKEVAQKYGRVPAKNFTGMLRLDHNRALSQLAGKSGREVSSLKNLVVWGNHSPTMYADYRFVKSNGDS----VKDLINDAAW 218          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.695e-57
Identity = 113/219 (51.60%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + APS+P +N T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D  +ATV+     K V++++ D  W
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPSLPRENFTAMLRLDHNRALSQIAAKTGKPVASIEKMFVWGNHSPTMYADYRYATVD----GKSVKDMINDPVW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 113/219 (51.60%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+  PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A  A  G  +EL D+AFPL+ GV    DA  A  G N+A++VG  PR +GMER D++S N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q+++KL V  +++K + IWGNHS++QYPD+ HA V   +G     E V D AW
Sbjct:    1 MSSTPVNVTVTGAAGQIGYALLFRIASGQLLGADTPVKLRLLEIPQAVRAAEGTALELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIKKITIWGNHSATQYPDIFHAEVGGRSG----AEAVGDQAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 114/217 (52.53%), Postives = 145/217 (66.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVILH+LD+P A  AL GV MEL D AFPL+ G+VAT D   A   V +A++VG  PR +GMERKD++  N +I+  Q  AL  HAA + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D   AT++     + V+ ++ DD W
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCAFPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAARDVKVLVVGNPANTNAWIAMKSAPDLDPKNFTAMLRLDHNRALSQIAAKTGKPVASIEKLAVWGNHSPTMYADYRFATID----GQSVKAMINDDVW 214          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.891e-57
Identity = 113/219 (51.60%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP   +A  G  MEL D AFPL++G+  T D      G N+A++VG  PR +GMER D+++ N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q++ K    VSD+K + IWGNHS++QYPD+ HA +   AG K   E V D+ W
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGHLLGPDVPVNLRLLEIPQGLKAAEGTAMELDDCAFPLLRGIEITDDPNVGFAGANVALLVGARPRTKGMERGDLLAANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRAISQLAAKTGAAVSDIKKLTIWGNHSATQYPDIFHAEI---AG-KNAAETVNDEVW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.891e-57
Identity = 117/217 (53.92%), Postives = 150/217 (69.12%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +AL GV MEL D A+PL+  VV + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL Q A+ + KVLVV NPANTNALI ++ AP +  +  T + RLDHNRA+ Q++EK    VS +KN+ IWGNHSS+QYPD++ ATV    G +P  +LV D  W
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVVMELRDGAYPLLADVVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGQALNQVASRDVKVLVVGNPANTNALIAQQNAPDLDPRQFTAMVRLDHNRAISQLAEKTGQPVSAIKNITIWGNHSSTQYPDLSQATV----GGRPALDLV-DRTW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57
Identity = 114/219 (52.05%), Postives = 150/219 (68.49%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+I PA +A  G  MEL D AFPL++G+  T D   A  G N+ ++VG  PR +GMER D++S N  I+K Q  A+  +AA + K+LVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++K    V+D+K + IWGNHS++QYPD+ HA+V   AG K   E+V D+ W
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIDITDDPNVAFDGTNVGLLVGARPRTKGMERGDLLSANGGIFKPQGKAINDNAADDVKILVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRALTQLAKKTGSTVADIKRLTIWGNHSATQYPDIFHASV---AG-KNAAEVVNDEKW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57
Identity = 119/221 (53.85%), Postives = 150/221 (67.87%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDAW
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDAW 217          
The following BLAST results are available for this feature:
BLAST of CK937738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_SACEN7.607e-5852.05Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_CUPTR1.298e-5751.60Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_AZOSB1.298e-5751.80Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_RALEJ1.695e-5751.60Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_FRASC2.213e-5751.60Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_CHRVO2.213e-5752.53Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_STRGG2.891e-5751.60Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_DEIDV2.891e-5753.92Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_STRAW3.775e-5752.05Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_BORPE4.931e-5753.85Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937738 ID=CK937738; Name=CK937738; organism=Citrus sinensis; type=EST; length=735bp
GGGGATCGAAGTTCTCCTTCTCCCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGCATGGT
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