CK937738

Overview
NameCK937738
Unique NameCK937738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.586e-55
Identity = 112/221 (50.68%), Postives = 149/221 (67.42%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK P+RV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPL+ G+ A  D + A    ++A++VG  PR  GMERKD++  N  I+  Q  A++  A+ N KVLVV NPANTNA I  + APS+PAKN T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +A ++ A+    V++++ DDAW
Sbjct:    1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 113/221 (51.13%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A EAL GV MEL D AFPL+ G+ A +D + A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRA  QI+ K    V+ ++ + +WGNHS + Y D   AT+    G + V++++ DD W
Sbjct:    1 MSKSPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEKAQEALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKPVASIEKLAVWGNHSPTMYADYRFATI----GGESVKDMINDDVW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.706e-55
Identity = 113/221 (51.13%), Postives = 148/221 (66.97%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK P+RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPL+ G+ A +D + A   V++A++VG  PR  GMER D++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +AT++     K V++++ D  W
Sbjct:    1 MAKAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMQAHSDPMTAFKDVDVALLVGARPRGPGMERADLLSANAQIFTAQGRALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATID----GKSVKDMINDPVW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.706e-55
Identity = 115/221 (52.04%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A  AL GV MEL D AFPL+ G+ A +D + A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRA  Q++ K   +V D+K + +WGNHS + Y D   ATV+     K V++ + D AW
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKGGFKVGDIKKLTVWGNHSPTMYADYRFATVD----GKSVKDAINDQAW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.534e-55
Identity = 112/214 (52.34%), Postives = 143/214 (66.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL ML+I PA EAL GV MEL D AFPL+ G+V + D   A    + A++VG  PR  GMERKD++  N +I+  Q  A+  HA+ + KVLVV NPANTNALI +  AP I  +  T + RLDHNR L Q++ KL+V + D+  + IWGNHS++QYPD+ H  V    G+  V ++ KD
Sbjct:    2 KAPVRVAVTGAAGQISYSLLFRIAAGEMLGKDQPVILQMLEITPALEALKGVAMELDDCAFPLLAGMVCSDDPNVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSVQGKAINDHASRDIKVLVVGNPANTNALIAQRNAPDINPRQFTAMMRLDHNRGLSQLAAKLDVTLEDITKMTIWGNHSATQYPDLFHTLVK---GDVAVEQVEKD 212          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.534e-55
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK P+RV VTGAAGQIGY+L+  IA G +LG DQPVIL +L+I    A  AL GV ME+ D AFPL+ GV A +D + A   V+IA++VG  PR  GMERKD++  N  I+  Q  AL+  A+ N KVLVV NPANTNA I  + AP++PAKN T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + YPD   AT++     K V+E + D+ W
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIDNEKAQNALKGVIMEIDDCAFPLLAGVSAHSDPMTAFKDVDIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASRNVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKTGKPVTAIEKLTVWGNHSPTMYPDYRFATID----GKSVKEAINDEVW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACISJ (Malate dehydrogenase OS=Acidovorax sp. (strain JS42) GN=mdh PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.534e-55
Identity = 115/221 (52.04%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A  AL GV MEL D AFPL+ G+ A +D + A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRA  Q++ K   +V D+K + +WGNHS + Y D   ATV+     K V++ + D AW
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKGGFKVGDIKKLTVWGNHSPTMYADYRFATVD----GKSVKDAINDPAW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 113/219 (51.60%), Postives = 145/219 (66.21%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  ++ LV DD W
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKTGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGESMLK-LVNDDVW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 113/219 (51.60%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DDAW
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDDAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 112/221 (50.68%), Postives = 151/221 (68.33%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K+PVRV VTGAAGQIGYA++  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G+ A +D + A   V+ A+++G  PR  GMER ++++ N +I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+D++ + +WGNHS + Y D   AT+N   GE  V++++ D  W
Sbjct:    1 MSKKPVRVAVTGAAGQIGYAILFRIASGEMLGKDQPVILQLLEVPVEKAQQALQGVMMELQDCAFPLLAGMEAHSDPMTAFKDVDYALLIGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLASKTGKAVADIEKMAVWGNHSPTMYADYRFATIN---GES-VKDMINDQDW 217          
The following BLAST results are available for this feature:
BLAST of CK937738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_AQUAR1.586e-5550.68Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_LEPCP2.072e-5551.13Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_RALPJ2.706e-5551.13Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDH_DIAST2.706e-5552.04Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_SACD23.534e-5552.34Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_HERAR3.534e-5551.58Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDH_ACISJ3.534e-5552.04Malate dehydrogenase OS=Acidovorax sp. (strain JS4... [more]
MDH2_BURVG4.615e-5551.60Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]
MDH1_BURTA4.615e-5551.60Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH1_RHOFD6.028e-5550.68Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937738 ID=CK937738; Name=CK937738; organism=Citrus sinensis; type=EST; length=735bp
GGGGATCGAAGTTCTCCTTCTCCCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGCATGGT
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