CK937738

Overview
NameCK937738
Unique NameCK937738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.290e-54
Identity = 113/219 (51.60%), Postives = 143/219 (65.30%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV  EL D AFPL+  +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA + ++ VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D  W
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVTELEDCAFPLLCNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRDKNW 214          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54
Identity = 115/219 (52.51%), Postives = 144/219 (65.75%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A   V+IA++VG  PR  GMERKD++  N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + YPD   AT + A+    V + + D  W
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDIALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMYPDYRFATADGAS----VGDAINDQEW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54
Identity = 110/219 (50.23%), Postives = 139/219 (63.47%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK PVR+ VTGAAGQI YALV  IA G +LG DQPVILH+LD+P    AL GV MEL D AFPL+ G+VAT D   A   ++I  +VG  PR +GMERKD++  N  I+  Q  AL + A  + +VLVV NPANTNA I  + AP +     + + RLDHNRA   ++ K  V V DV  +I+WGNHS + YPD   A     AG + + E + D+AW
Sbjct:    1 MAKSPVRIAVTGAAGQIAYALVFRIASGALLGPDQPVILHLLDLPQMQGALGGVMMELEDCAFPLLAGMVATDDPKVAFKDIDIGFLVGARPRGKGMERKDLLGANAEIFTVQGRALNEVAKRSARVLVVGNPANTNAYIAMKSAPDLSPDCFSAMIRLDHNRAASMLAAKAGVNVGDVGKLIVWGNHSPTMYPDYRFA----EAGGRKLAEAINDEAW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 113/219 (51.60%), Postives = 144/219 (65.75%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A   V++A++VG  PR  GMERKD++  N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + YPD   AT + A+    + + + D  W
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDVALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMYPDYRFATADGAS----IGDAINDQEW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 110/219 (50.23%), Postives = 143/219 (65.30%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT    A  + + +L+ DD W
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPEVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT----AEGQDLTKLINDDEW 215          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 112/219 (51.14%), Postives = 145/219 (66.21%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + KVLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSTKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS----IADAINDQEW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 112/219 (51.14%), Postives = 145/219 (66.21%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + KVLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+    + + + D  W
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSAKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS----IADAINDQEW 216          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.704e-54
Identity = 113/221 (51.13%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+ G+ A  D + A    + A++VG  PR  GMER +++S N +I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P KN T + RLDHNRA  QI+ K    VS +K + +WGNHS + Y D   AT++ A+    V++++ D  W
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLSINGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKAAPDLPRKNFTAMLRLDHNRAASQIAAKTGKPVSSIKQLAVWGNHSPTMYADYRFATIDGAS----VKDMINDQVW 217          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.137e-53
Identity = 107/206 (51.94%), Postives = 141/206 (68.45%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 701
            K PVRV +TGAAG + Y+L+  IA G MLG DQPVIL +L+IP A + L GV +EL D AFPL+ G+V + D   A    + A++VG  PR  GMER D++  N  I+  Q  AL   A P  KVLVV NPANTNALIL + AP I  +NIT + RLDHNRAL Q+++K+    SDV+ +++WGNHS+SQ+PD+++A +   AGEK
Sbjct:    2 KPPVRVAITGAAGHVSYSLIFRIAAGHMLGKDQPVILQLLEIPQAMDVLKGVVLELEDCAFPLLHGLVCSDDVHVAFKDADYAILVGARPRGPGMERSDLIQANGPIFTTQGEALSAEANPEVKVLVVGNPANTNALILLKNAPYINPRNITAMMRLDHNRALFQVAKKMGCHCSDVEKMVVWGNHSASQFPDISYAEI---AGEK 204          
BLAST of CK937738 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.485e-53
Identity = 111/219 (50.68%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 734
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAW 216          
The following BLAST results are available for this feature:
BLAST of CK937738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_COXBN2.290e-5451.60Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_XANC52.991e-5452.51Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_ACICJ3.907e-5450.23Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]
MDH_XANAC5.103e-5451.60Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_BURPP5.103e-5450.23Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_STRMK6.664e-5451.14Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_STRM56.664e-5451.14Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_METPP8.704e-5451.13Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH_DESPS1.137e-5351.94Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_ACIBY1.485e-5350.68Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_E03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937738 ID=CK937738; Name=CK937738; organism=Citrus sinensis; type=EST; length=735bp
GGGGATCGAAGTTCTCCTTCTCCCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGCATGGT
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