CK937727

Overview
NameCK937727
Unique NameCK937727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICFE (GTP-binding protein era homolog OS=Rickettsia felis GN=era PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.081e-11
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFD 707
            +++  IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQ+ ++DTPG+   K        K  V  AWS+++  +++M++ D
Sbjct:    6 TISFCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGTLE----KAMVRCAWSSLHSADLVMLIID 94          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICPR (GTP-binding protein era homolog OS=Rickettsia prowazekii GN=era PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFD 707
            +++V IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQI ++DTPG+   K        K  V  AWS+V   ++++ + D
Sbjct:    8 TISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIVTLKDTQIILYDTPGIFEPKGMLE----KAMVRCAWSSVYSADLVLSIID 96          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_BRASO (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain ORS278) GN=era PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 40/124 (32.26%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            V +IGAPN GKS+++N +VG+KV+ VSRK  TT   + G++ +  +QI + DTPG+   K        +  V +AWS  +  +++ V+ D  + L      +I       K A    +++L +N
Sbjct:   17 VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGQSQIILVDTPGIFSPKRRLD----RAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAII------DKAASVAHEKILVVN 130          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_OLICO (GTP-binding protein era homolog OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=era PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 758
            V +IGAPN GKS+++N +VG+KV+ VSRK  TT   + G++ + + QI + DTPG+   K        +  V +AWS  +  +++ V+ D    L      +   +E
Sbjct:   18 VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVEGNAQIVLVDTPGIFTPKRRLD----RAMVSTAWSGAHDADMVCVLLDARAGLDEEAEAIFTKLE 120          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_BRASB (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=era PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 40/124 (32.26%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            V +IGAPN GKS+++N +VG+KV+ VSRK  TT   + G++ +  +QI + DTPG+   K        +  V +AWS  +  +++ V+ D  + L      +I       K A    +++L +N
Sbjct:   18 VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGTSQIILVDTPGIFSPKRRLD----RAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAII------DKAAAVAHQKILVVN 131          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_VIBCH (GTP-binding protein era homolog OS=Vibrio cholerae GN=era PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            V I+G PN GKS+++N ++G K+S  SRK  TT H ++GV T  + Q    DTPGL + +    ++ +     S+ S VNL  VL VV     H T+ D  V   +++           VLC+N
Sbjct:   34 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDVNL--VLFVVEGT--HWTADDEMVFTKLQKANFPV------VLCVN 147          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICTY (GTP-binding protein era homolog OS=Rickettsia typhi GN=era PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 34/93 (36.56%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFD 707
            +++V IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQI ++DTPG+   K        K  V  AWS++   ++++ + D
Sbjct:    8 TISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQIILYDTPGIFEPKGMLE----KAMVRCAWSSLYSADLVLSIID 96          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_VIBVY (GTP-binding protein era homolog OS=Vibrio vulnificus (strain YJ016) GN=era PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            + I+G PN GKS+++N ++G K+S  SRK  TT H ++GV T  D Q    DTPGL + +    ++ +     S+ S VNL   L+       H T+ D  V+  +++           VLC+N
Sbjct:   29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLV----DGTHWTNDDEMVLNKLQKANFPV------VLCVN 142          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_VIBVU (GTP-binding protein era homolog OS=Vibrio vulnificus GN=era PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            + I+G PN GKS+++N ++G K+S  SRK  TT H ++GV T  D Q    DTPGL + +    ++ +     S+ S VNL   L+       H T+ D  V+  +++           VLC+N
Sbjct:   29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLV----DGTHWTNDDEMVLNKLQKANFPV------VLCVN 142          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_VIBPA (GTP-binding protein era homolog OS=Vibrio parahaemolyticus GN=era PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            + I+G PN GKS+++N ++G K+S  SRK  TT H ++GV T  D Q    DTPGL + +    ++ +     S+ S VNL   L+       H T  D  V+  +++           VLC+N
Sbjct:   29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLV----DGTHWTKDDEMVLTKLQKSNFPV------VLCVN 142          
The following BLAST results are available for this feature:
BLAST of CK937727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERA_RICFE1.081e-1135.48GTP-binding protein era homolog OS=Rickettsia feli... [more]
ERA_RICPR1.412e-1137.63GTP-binding protein era homolog OS=Rickettsia prow... [more]
ERA_BRASO1.412e-1132.26GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_OLICO1.844e-1133.64GTP-binding protein era homolog OS=Oligotropha car... [more]
ERA_BRASB1.844e-1132.26GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_VIBCH3.146e-1135.48GTP-binding protein era homolog OS=Vibrio cholerae... [more]
ERA_RICTY3.146e-1136.56GTP-binding protein era homolog OS=Rickettsia typh... [more]
ERA_VIBVY5.366e-1133.06GTP-binding protein era homolog OS=Vibrio vulnific... [more]
ERA_VIBVU5.366e-1133.06GTP-binding protein era homolog OS=Vibrio vulnific... [more]
ERA_VIBPA9.153e-1133.06GTP-binding protein era homolog OS=Vibrio parahaem... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_F02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937727 ID=CK937727; Name=CK937727; organism=Citrus sinensis; type=EST; length=868bp
GGGGAATCCTTGAAATGAAAGCTTTGAGAGCTTTAAGAACCCTCGCGCCC
TTTGCAGAAAAACCCAATAAGCCCCGTTTAAACCCTTTATTCATTCATCG
ATTCTACTCGGCGCAGCCACAACAAACAGACAATGAAACCGAAAACGACT
GTGATTCAGTTTTTGACAGTTCCTATTTCAGAATTCCGACGATTGATGAT
CCCCAGAATAATAACGCCGCCAAAAAGCAAGAGCCTAATTGGGATGAGAA
GTACAGAGAGAGGACTGATAGGATAGTCTTTGGGGAAGAAGCCCAGAAAG
GGAAGTTGAGGATTTTTCAGGAGGAAGAAGAGGAGAGGAAGCATAGAGCT
CTTGCAAAAGCGCTTCTTCAGGCTGCTTTGGAGAGACAAGAGGAGGAGGA
AGAAGAGGTGAAGGAAGAGGACCAGAAATCGGTTGCTGTTGGGATTATTG
GCGCGCCTAATGCCGGAAAGTCTTCCATCATTAACTACATGGTTGGGACA
AAGGTTTCTGCTGTTTCTCGGAAGACGAATACAACTACTCATGAAGTATT
AGGAGTGATGACAAAGGCGGACACTCAAATTTGCATCTTTGATACCCCTG
GACTTATGTTGAACAAAAGTGGGTACTCTCACAAAGATGTCAAGGTTCGC
GTGGAAAGTGCATGGAGTGCGGTTAATCTATTTGAGGTGCTCATGGTTGT
TTTTGATGTTCATAGACATCTTACCAGTCCTGATTCAAGGGTTATAAGAT
TGATTGAACGTATGGGCAAACAAGCTCCTCCAAAGCAGAAGCGAGTTTTA
TGTATGAATAAAGTTGATTTAGTTACAAAGAAAAAAGACTTGCTAAAAGT
TGCTGAGCAGTTTNNNNA
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