CK937722

Overview
NameCK937722
Unique NameCK937722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_POPAL (Cytochrome c biogenesis protein ccsA OS=Populus alba GN=ccsA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.262e-53
Identity = 115/198 (58.08%), Postives = 134/198 (67.68%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNDYRY 592
            VVSI I I+ +T LV+E  GLY SSE+GM  T FCLTGLLITRW+YS H P+SDLYE           IH +  FK ++N+LS ITAPS FFTQGFAT G LT MHQS+ILVPALQ QWL+MHVSMMV GY             LVITFRKVIR+  K  N   +N SF   EIQYM EKK++F N+   S+RN YR+
Sbjct:   17 VVSIVIIIHFLTLLVNEFVGLYDSSEKGMLTTFFCLTGLLITRWIYSGHLPISDLYESLIFLSWIFSIIHMVPYFKKHKNYLSTITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNL--LNDSFPVDEIQYMMEKKSIFKNTFFPSSRNYYRF 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_POPTR (Cytochrome c biogenesis protein ccsA OS=Populus trichocarpa GN=ccsA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.596e-52
Identity = 114/198 (57.58%), Postives = 133/198 (67.17%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNDYRY 592
            VVSI I I+ +T LV+E  GLY SSE+GM  T FCLTGLLITRW+YS H P+SDLYE           IH +  FK ++N+LS ITAPS FFTQGFAT G LT MHQS+ILVPALQ QWL+MHVSMMV GY             LVITFRKVIR+  K  N   +N SF   EIQYM EKK++  N+   S+RN YR+
Sbjct:   17 VVSIVIIIHFLTLLVNEFVGLYDSSEKGMLTTFFCLTGLLITRWIYSGHLPISDLYESLIFLSWIFSIIHMVPYFKKHKNYLSTITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNL--LNDSFPVDEIQYMMEKKSILKNTFFPSSRNYYRF 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_CUCSA (Cytochrome c biogenesis protein ccsA OS=Cucumis sativus GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.281e-51
Identity = 112/199 (56.28%), Postives = 132/199 (66.33%), Query Frame = -1
Query:    8 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLS--AITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYR 592
            V+SI ITI LIT L++E  GLY SSE+GM AT FC+TGLL+TRW+Y RH PLSDLYE           IH    FK  +NHLS  AITAPS  FTQGFATSGFLT+MHQS +LVPALQ  WLMMHVSMMVLGY             +VITF+K IR+F K  N   +N  F F+EIQY+NE      N+   S++N Y+
Sbjct:   17 VISIVITIQLITLLINETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLPLSDLYESLLFLSWAFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEMHQSPLLVPALQSHWLMMHVSMMVLGYAALLCGSLFSVALIVITFQKAIRIFCKNNNL--LNALFSFNEIQYINEGNYFVRNTSFFSSKNYYK 213          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_LIRTU (Cytochrome c biogenesis protein ccsA OS=Liriodendron tulipifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.891e-51
Identity = 113/198 (57.07%), Postives = 133/198 (67.17%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            ++SI ITI+L+T LV EI GL   SE+GM A  FC+TGLL+TRW+YSRHFPLSDLYE           IH +    N++N LSAITAPSA FTQGFATSG  T+MHQS ILVPALQ QWLMMHVSMM+L Y             LVITFRK I +  K  +   + GSF F EI Y+NEK+NV  N+  LS RN +RY
Sbjct:   17 IISIVITIHLVTLLVHEIVGLCDPSEKGMIAAFFCITGLLVTRWIYSRHFPLSDLYESLMFLSWSFSIIHMVPKIWNHKNDLSAITAPSAIFTQGFATSGLSTEMHQSAILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNIGIVGKSNHL--LIGSFSFDEIHYLNEKRNVLQNTSFLSFRNYHRY 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_SPIOL (Cytochrome c biogenesis protein ccsA OS=Spinacia oleracea GN=ccsA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.522e-50
Identity = 114/198 (57.58%), Postives = 136/198 (68.69%), Query Frame = -1
Query:    8 VSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRK-VIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNDYR 589
            VS+ IT++LIT LV+EI GLY S E+GM  T FC+TGLL+TRWVY +HFPLSDLYE           IH I  F K  +N L+ ITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVLGY             L+I F+K +I++F KRK+   +N SF F EIQY+NEK N+  N+  +  RN YR
Sbjct:   18 VSVVITLHLITLLVNEIVGLYNSLEKGMLVTFFCITGLLVTRWVYWKHFPLSDLYESLIFLSWSFYLIHMIPSFLKKEKNSLNVITAPSAIFTQGFATSGLLTEMHQSGILVPALQSQWLMMHVSMMVLGYAALLGGSLLSVTLLIIIFQKDLIQVFDKRKHL--LNESFFFGEIQYINEKSNIVQNASPSYVRNYYR 213          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_CALFG (Cytochrome c biogenesis protein ccsA OS=Calycanthus floridus var. glaucus GN=ccsA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.522e-50
Identity = 111/200 (55.50%), Postives = 135/200 (67.50%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNDYRY 592
            ++SI ITI+L+  LV +  GL  SSE+GM AT FC+TGLL+TRW+YSRHFPLSDLYE           IH +  F+N++N LSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+LGY             LVITFRK + +  K  +F  + GSF F EI+Y NEK+   +    +  S RN +RY
Sbjct:   17 IISIVITIHLLNLLVHDTVGLCDSSEKGMMATFFCITGLLVTRWIYSRHFPLSDLYESLMFLSWSFSIIHMVPYFRNHKNSLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMLLGYASLLCGSLLSVALLVITFRKTLGIPGKNNHF--LIGSFPFGEIRYFNEKRKRSVLKKTSFFSFRNYHRY 214          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_NANDO (Cytochrome c biogenesis protein ccsA OS=Nandina domestica GN=ccsA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.338e-50
Identity = 110/198 (55.56%), Postives = 130/198 (65.66%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            +VSI ITIYL+T LV E  GLY SSE+G+ AT FC+TG L+ RW+YS HFPLSDLYE           IH +  F N++N LS ITAPSA FTQGFATSG LT+MH+S  LVPALQ QWLMMHVSMM+L Y             LVITFRK +  F K K+   + G F F EI+Y+NE  NV  N+  +S RN  RY
Sbjct:   17 IVSIVITIYLMTLLVHETVGLYDSSEKGLIATFFCITGFLVIRWIYSGHFPLSDLYESLMFLSWSFSIIHMVPYFTNHKNLLSTITAPSAIFTQGFATSGLLTEMHRSTKLVPALQSQWLMMHVSMMILSYAALLCGSLLSIALLVITFRKNVENFGKSKSNPFLIGPFSFGEIKYVNEINNVLRNTFLISFRNFRRY 214          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_PANGI (Cytochrome c biogenesis protein ccsA OS=Panax ginseng GN=ccsA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.635e-49
Identity = 110/196 (56.12%), Postives = 129/196 (65.82%), Query Frame = -1
Query:    8 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS-LSARNDYR 592
            +VSI ITI+LIT LVDEI  LY SSE+GM A   C+TGLL+TRW+YSRHFPLSDLYE           IH +  FK  + +LS ITA S  FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+L Y             LVITFRK   +F KR     +N  F F EIQYMNE+ NV   +  SA+N YR
Sbjct:   17 IVSIVITIHLITLLVDEIIKLYDSSEKGMIAIFLCITGLLVTRWIYSRHFPLSDLYESLIFLSWSLSVIHIVPYFKKKKKNLSTITASSVIFTQGFATSGLLTEIHQSAILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRKNRNIFCKRNPL--LNELFSFGEIQYMNERNNVLRTTFFSAKNYYR 210          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_OENEH (Cytochrome c biogenesis protein ccsA OS=Oenothera elata subsp. hookeri GN=ccsA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.212e-49
Identity = 107/197 (54.31%), Postives = 130/197 (65.99%), Query Frame = -1
Query:    8 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYR 592
            +VSIGITI+LIT  VDEI GLY SSE+G+  T  C+TGLL+TRW YS HFPLS+LYE           IH    FK  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY             LVITFRK +R+F K+K F  +  SF F EIQY NE  NV L++  +S++N YR
Sbjct:   17 LVSIGITIFLITLSVDEIIGLYDSSEKGVIGTFLCITGLLVTRWAYSGHFPLSNLYESLLFLSWSFAIIHMFPYFKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAF--LKDSFSFVEIQYRNEPSNVLLSTSFISSKNYYR 211          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_OENBI (Cytochrome c biogenesis protein ccsA OS=Oenothera biennis GN=ccsA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.212e-49
Identity = 107/197 (54.31%), Postives = 130/197 (65.99%), Query Frame = -1
Query:    8 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYR 592
            +VSIGITI+LIT  VDEI GLY SSE+G+  T  C+TGLL+TRW YS HFPLS+LYE           IH    FK  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY             LVITFRK +R+F K+K F  +  SF F EIQY NE  NV L++  +S++N YR
Sbjct:   17 LVSIGITIFLITLSVDEIIGLYDSSEKGVIGTFLCITGLLVTRWAYSGHFPLSNLYESLLFLSWSFAIIHMFPYFKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAF--LKDSFSFVEIQYRNEPSNVLLSTSFISSKNYYR 211          
The following BLAST results are available for this feature:
BLAST of CK937722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CCSA_POPAL9.262e-5358.08Cytochrome c biogenesis protein ccsA OS=Populus al... [more]
CCSA_POPTR4.596e-5257.58Cytochrome c biogenesis protein ccsA OS=Populus tr... [more]
CCSA_CUCSA2.281e-5156.28Cytochrome c biogenesis protein ccsA OS=Cucumis sa... [more]
CCSA_LIRTU3.891e-5157.07Cytochrome c biogenesis protein ccsA OS=Liriodendr... [more]
CCSA_SPIOL2.522e-5057.58Cytochrome c biogenesis protein ccsA OS=Spinacia o... [more]
CCSA_CALFG2.522e-5055.50Cytochrome c biogenesis protein ccsA OS=Calycanthu... [more]
CCSA_NANDO7.338e-5055.56Cytochrome c biogenesis protein ccsA OS=Nandina do... [more]
CCSA_PANGI1.635e-4956.12Cytochrome c biogenesis protein ccsA OS=Panax gins... [more]
CCSA_OENEH6.212e-4954.31Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_OENBI6.212e-4954.31Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_G08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937722 ID=CK937722; Name=CK937722; organism=Citrus sinensis; type=EST; length=622bp
GGGGATACCTGTAATCATTTCTAGCGGAAAGACTATTTAGAAAAACATTC
TTTTTTTCGTTCATGTATTGGATTTCACTGAAACAAAATGACCCATTTAC
ATGTACAAAATTTTTTCTTTTCAAAAAAAGCCTTATCACTTTTCGAAATG
TAATGACTAGAAGAGCCGTGGATAATAATGATCCACATAAAAGAGCTGCA
TAGCCCAATACCATCATACTTACGTGCATCATTAACCACTGGACTTGGAG
AGCGGGTACTAATATTCTGGATTGATGCATTTTGGTTAAAAAACCCGAAG
TCGCAAAGCCTTGGGTAAAAAAAGCACTTGGTGCCGTTATAGCGCTTAAA
TGATTTTGATTATTTTTAAAATCAAAAATCTTATGAATAATAGATAAACT
CCATGAAAGAAAGATTAATGATTCATATAAATCACTTAATGGGAAATGTC
TCGAGTAAACCCAACGGGTGATTAATAATCCTGTTAGACAGAAAGCGGTA
GCTGTCATCCCCCTTTCTGATGAAGCATATAGCCCTCTGATTTCATCGAC
TAAGAAGGTTATTAAATAAATTGTAATTCCAATTGAAACGACCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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