CK937718

Overview
NameCK937718
Unique NameCK937718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: MACD1_BOVIN (MACRO domain-containing protein 1 OS=Bos taurus GN=MACROD1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.668e-25
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YG-VTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKE 589
            GDI++  VD    AIVN+AN  +LGGGG DG I RAAGP L + C  +        C TG+A+IT G++LPA +VIHTVGPI +G  + +  A LRS Y +SL L   + ++  AFP IS G++ YP+E AA + ++ ++E+    K+
Sbjct:  159 GDITKLEVD----AIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------NCETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREWLEQHKD 296          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y2902_LISIN (UPF0189 protein lin2902 OS=Listeria innocua GN=lin2902 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.846e-25
Identity = 75/172 (43.60%), Postives = 102/172 (59.30%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRV-PEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS-LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND-----FKEVHFVLFTDDLHNLWLKKAN 646
            GDI++  VD     IVN+AN  +LGGGG DGAI +AAGP+LL+ C  V   +G    CP GEA IT    L A  +IH VGPI+    + EA+ L S Y  +L LA   ++  IAFP IS G+Y +P + AA +A+ TV+++A +      KEV FV F ++   L+ K  N
Sbjct:    8 GDITEQNVD----VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIG---SCPAGEAVITSAGDLKAHFIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDSSIKEVRFVCFDEENLTLYNKLIN 172          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y719_THEVO (UPF0189 protein TV0719 OS=Thermoplasma volcanium GN=TV0719 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.717e-25
Identity = 72/171 (42.11%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKE---VHFVLFTDDLHNLWLKKANELL 655
            GDI+    D   +AIVN+AN  ++GGGG DGAI    G  +   C  +    +    P GEA IT G KL A +VIHTVGPIY        +L S+Y  SL +AK + I+ IAFPAIS G+Y YP EEA+ IA+  V +F ++ KE   + FVL+    +  ++  A++ L
Sbjct:   16 GDIT----DVNCEAIVNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPKGLPPGEADITSGGKLKAKYVIHTVGPIYRGQEEDAETLYSSYYRSLEIAKIHGIKCIAFPAISTGIYGYPFEEASVIALKAVTDFLSN-KEGYIIKFVLYGQARYQTFVSLASDFL 181          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y1105_THEAC (UPF0189 protein Ta1105 OS=Thermoplasma acidophilum GN=Ta1105 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK---EVHFVLFTDD 616
            GDI++      ++AIVN+AN  ++GGGG DGAI  AAGPEL     ++    +    P GEA IT G++L ASH+IHTVGP++ G     +  L  +Y++ L LA+   I  IAFPA+S G Y +P + A  IAI +V +F  D      V FV +T+D
Sbjct:   16 GDITE----SDAEAIVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERYPNGLPPGEAVITRGYRLKASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAFPALSTGAYGFPFDRAERIAIRSVIDFLKDESAGYTVRFVFYTED 170          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y1951_FUSNN (UPF0189 protein FN1951 OS=Fusobacterium nucleatum subsp. nucleatum GN=FN1951 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.749e-23
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  188 DAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS-LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 571
            +AIVN+AN  +  GGG  GAI +AAG EL + C    E+G    C TGEA IT G+ LP  ++IHTVGP Y    N EA  L SAY  SL LA    I+ IAFP+IS G+Y +P +E A IA++T  +F
Sbjct:   20 EAIVNAANSSLEMGGGVCGAIFKAAGSELAQECK---EIG---GCNTGEAVITKGYNLPNKYIIHTVGPRYSTGENREAERLASAYYESLKLANEKGIRRIAFPSISTGIYRFPVDEGAKIALTTAIKF 142          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y2288_DEIRA (UPF0189 protein DR_2288 OS=Deinococcus radiodurans GN=DR_2288 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 66/152 (43.42%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  188 DAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLP---ASHVIHTVGPIYGVTINPEASLRS-AYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKE--VHFVLF-TDDLH 622
            DA+V +AN++++GGGG DG I RAAGP LL+A   +         PTG A ITP F L      +VIH VGPI+    + EA L + AY+ SL L   N  + +AFP+IS G+Y YP + AA IA++T+++F     +  V  VL+  D LH
Sbjct:   16 DAVVTAANKQLMGGGGVDGVIHRAAGPRLLQAIRPIGGT------PTGTAVITPAFDLERQGVKYVIHAVGPIWRGGQHGEAELLAGAYRESLRLGVENGCRSVAFPSISTGVYGYPLDRAAPIALATIQDFLRSHPDLSVRMVLYGADALH 161          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y189_ACISE (UPF0189 protein OS=Acinetobacter sp. (strain ED45-25) PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  191 AIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGP--IYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLF 607
            AIVNSAN+ +LGGGG D  I + AGP + E C R+ +   G  CPTG+A +T    LPA ++IH VGP  + G    P+  L  AY N+L  A   +   ++FP IS G+Y +P ++AA IAI T+      +  V  V F
Sbjct:   18 AIVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKGG--CPTGQAEVTTAGNLPAKYLIHAVGPRWLDGEHNEPQL-LCDAYSNALFKANEIHALTVSFPCISTGVYGFPPQKAAEIAIGTILSMLPQYDHVAEVFF 155          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: GDAP2_NEMVE (Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.867e-19
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  185 SDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDF 583
            +DAIVN+ NE +   G     + RAAGPEL++ C +       + C TGEA+I+ G+ LPA +VIHTVGP Y        E++L S Y+N++ L + N I  I    ++     YP E+ A IA+ TV+ F   +
Sbjct:   65 ADAIVNTTNESLSDRGALSERVHRAAGPELMQECRQQL-----LGCRTGEAKISEGYNLPARYVIHTVGPRYNTKYKTAAESALFSCYRNTMRLVRENKISTIGVCVVNTTKRGYPPEDGAHIALRTVRRFLEKY 194          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: GDAP2_XENLA (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.865e-17
Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  191 AIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVH 595
            A+VN++NE +        +I R +GPELLE   ++        C TGEA++T GF L A ++IHTVGP Y        E+SL S Y+N L LAK   +  + F  I+    CYP ++A  IA+ TV+ F     EVH
Sbjct:   71 ALVNTSNETLTDKNPVSDSIFRYSGPELLEEMQKLKG------CRTGEAKLTKGFNLAARYIIHTVGPKYKTKYRTAAESSLYSCYRNVLQLAKEQGMASVGFCVITTQKRCYPLDDATHIALRTVRRFL----EVH 197          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y508_THEMA (UPF0189 protein TM_0508 OS=Thermotoga maritima GN=TM_0508 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHR-VPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 571
            GDI++  VD    AIVN+ANE +  GGG  GAI RA G  + E   R V E G   R PTGEA +T   KL A +VIHTVGP++ G +   +  L  A  N+L  A    ++ I+ PAIS G++ +P E A  I    +++F
Sbjct:  434 GDITREEVD----AIVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERG---RVPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMPAISTGIFGFPKERAVGIFSKAIRDF 568          
The following BLAST results are available for this feature:
BLAST of CK937718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MACD1_BOVIN1.668e-2544.59MACRO domain-containing protein 1 OS=Bos taurus GN... [more]
Y2902_LISIN2.846e-2543.60UPF0189 protein lin2902 OS=Listeria innocua GN=lin... [more]
Y719_THEVO3.717e-2542.11UPF0189 protein TV0719 OS=Thermoplasma volcanium G... [more]
Y1105_THEAC8.280e-2542.77UPF0189 protein Ta1105 OS=Thermoplasma acidophilum... [more]
Y1951_FUSNN7.749e-2349.61UPF0189 protein FN1951 OS=Fusobacterium nucleatum ... [more]
Y2288_DEIRA1.012e-2243.42UPF0189 protein DR_2288 OS=Deinococcus radiodurans... [more]
Y189_ACISE4.701e-2041.84UPF0189 protein OS=Acinetobacter sp. (strain ED45-... [more]
GDAP2_NEMVE8.867e-1938.52Protein GDAP2 homolog OS=Nematostella vectensis GN... [more]
GDAP2_XENLA4.865e-1739.42Ganglioside-induced differentiation-associated pro... [more]
Y508_THEMA1.849e-1642.25UPF0189 protein TM_0508 OS=Thermotoga maritima GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_G03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937718 ID=CK937718; Name=CK937718; organism=Citrus sinensis; type=EST; length=852bp
GGGGGTGAGAAAGCCGGTGGACAGCCATTGGCATCATCCTCATCCTTGTT
CACATTTCTCACGATCTCGTTTGTTTATTCATTGGACGGCAGTTATGACT
TTCAAAGTTGCTACGCTGTCATTGTCAAGTAGTGCGCTCAAGATCAAGAA
AGGAGATATCTCTCAGTGGTTCGTTGATGGCTTTTCTGATGCAATTGTTA
ATTCAGCCAATGAGAGAATGCTTGGAGGTGGCGGTTGCGATGGAGCTATA
CGTAGGGCTGCAGGACCAGAACTTCTAGAAGCTTGTCATAGAGTTCCAGA
AGTTGGATTTGGAATCCGTTGTCCCACAGGAGAAGCAAGAATTACACCAG
GTTTTAAATTGCCTGCATCTCATGTGATTCACACTGTTGGCCCAATCTAT
GGTGTTACTATTAACCCTGAAGCTTCCCTGAGAAGTGCGTACAAGAACAG
CTTGAGCTTGGCCAAAGCGAATAACATTCAGTACATTGCTTTTCCTGCCA
TATCGTGTGGCTTATATTGTTATCCTCATGAGGAAGCCGCCACAATAGCT
ATATCTACAGTCAAAGAATTTGCTAATGACTTTAAGGAGGTGCACTTTGT
TCTGTTTACAGATGATCTCCACAATCTTTGGTTGAAGAAGGCAAATGAAT
TGCTGTCTTTTTCATCTTGAGGATGTAAAAAACTTTGAAGTTGGTACAAG
TTCAAAGTTGATGTCCTTCGAGCGACTGGTATATCAGTCTTTGGACCAAA
AAATTAGAGGGATTTTACAAGAAATAGGCTTACAAAACGCTCAAATTATG
TCAATATGCCGATTTTCTAAAATGTCAAAATTACATTTCCCATTAAACTT
CT
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