FC921780

Overview
NameFC921780
Unique NameFC921780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.482e-21
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYG N AALST LFN+G SCG C+ I C     P WC  G +I VT TN+CP
Sbjct:   40 MGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCP 104          

HSP 2 Score: 36.965 bits (84), Expect = 9.482e-21
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCN  + HFD+SQP +E I
Sbjct:  112 GGWCNATRPHFDMSQPAWENI 132          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.711e-20
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG-SIFVTATNFC 184
            GACGYG+L + GYG  T  LS  LF  G  CGACFE++CV+D RWC PG SI +TATNFC
Sbjct:   59 GACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFC 118          

HSP 2 Score: 31.5722 bits (70), Expect = 2.711e-20
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GG CNPP +HF L    FE+IA
Sbjct:  129 GGHCNPPNKHFVLPIEAFEKIA 150          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.223e-19
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCPS 190
            + GACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC  G ++ VTATNFCP+
Sbjct:   44 LGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPT 109          

HSP 2 Score: 36.1946 bits (82), Expect = 2.223e-19
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  219 GWCNPPQQHFDLSQPVFEQIA 281
            GWCN P+ HFD+S P F +IA
Sbjct:  114 GWCNLPRHHFDMSSPAFFRIA 134          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.398e-18
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG-SIFVTATNFC 184
            GACG+G+L + GYG  T  LSTALF  G +CG C+E++CV+D ++C PG SI VTATNFC
Sbjct:   51 GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFC 110          

HSP 2 Score: 29.6462 bits (65), Expect = 1.398e-18
Identity = 13/22 (59.09%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GG CNPP  HF L    FE+IA
Sbjct:  121 GGVCNPPNHHFLLPIQSFEKIA 142          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.257e-17
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2
Query:    8 GACGY-GNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCP 187
            GACGY  N     Y T TAALST LF +G  CG C+E++CV  P WC PG  S+ +T TN CP
Sbjct:   72 GACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCP 133          

HSP 2 Score: 39.2762 bits (90), Expect = 3.257e-17
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD++ P F ++A
Sbjct:  143 GGWCNPPRHHFDMAPPSFLKLA 164          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.268e-17
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNF 181
            M GACGYGNLY + YG N AALST LFN+G SCG C+ I C     P WC  G +I VT TN+
Sbjct:   40 MGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY 102          

HSP 2 Score: 34.6538 bits (78), Expect = 3.268e-17
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCN  + +FD+SQP +E I
Sbjct:  103 GGWCNATRPYFDMSQPAWENI 123          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.211e-16
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFC 184
            GACGYG+L    YG  TA +S ALF  G +CG C+E++CVN   WC  GS  + VTAT+FC
Sbjct:   53 GACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFC 113          

HSP 2 Score: 34.6538 bits (78), Expect = 1.211e-16
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCN P++HF++S+  F ++A
Sbjct:  124 GGWCNFPKEHFEMSEAAFLRVA 145          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCP 187
            GACGYG+L +  +   +A LS  LFN G SCGAC E++CVN  RWC  G  S+ VTAT+FCP
Sbjct:   49 GACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCP 110          
The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP19_ORYSJ9.482e-2161.54Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH2.711e-2063.33Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP12_ARATH2.223e-1953.03Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP10_ORYSJ1.398e-1860.00Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ3.257e-1753.97Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ3.268e-1758.73Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.211e-1654.10Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH2.459e-1456.45Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06052C04T7 RindPdigS Citrus sinensis cDNA clone C06052C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bp
CATGGATGGCGCTTGTGGGTATGGAAACTTATACCGCGAGGGATATGGGA
CAAACACCGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAGCTGT
GGGGCTTGTTTTGAGATCCAGTGTGTTAATGACCCAAGATGGTGCCCTCC
GGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCCTCCAAATAATGCT
CCCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGA
CCTCTCTCAGCCTGTGTTTGAACAAATTGCTCA
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