FC921780
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 9.482e-21 Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GYG N AALST LFN+G SCG C+ I C P WC G +I VT TN+CP Sbjct: 40 MGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCP 104 HSP 2 Score: 36.965 bits (84), Expect = 9.482e-21 Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCN + HFD+SQP +E I Sbjct: 112 GGWCNATRPHFDMSQPAWENI 132
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.711e-20 Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 2 Query: 8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG-SIFVTATNFC 184 GACGYG+L + GYG T LS LF G CGACFE++CV+D RWC PG SI +TATNFC Sbjct: 59 GACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFC 118 HSP 2 Score: 31.5722 bits (70), Expect = 2.711e-20 Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GG CNPP +HF L FE+IA Sbjct: 129 GGHCNPPNKHFVLPIEAFEKIA 150
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.223e-19 Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCPS 190 + GACGY N Y G+G +TAALS LF +G SCG C++++C DP+WC G ++ VTATNFCP+ Sbjct: 44 LGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPT 109 HSP 2 Score: 36.1946 bits (82), Expect = 2.223e-19 Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 219 GWCNPPQQHFDLSQPVFEQIA 281 GWCN P+ HFD+S P F +IA Sbjct: 114 GWCNLPRHHFDMSSPAFFRIA 134
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 1.398e-18 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2 Query: 8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG-SIFVTATNFC 184 GACG+G+L + GYG T LSTALF G +CG C+E++CV+D ++C PG SI VTATNFC Sbjct: 51 GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFC 110 HSP 2 Score: 29.6462 bits (65), Expect = 1.398e-18 Identity = 13/22 (59.09%), Postives = 14/22 (63.64%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GG CNPP HF L FE+IA Sbjct: 121 GGVCNPPNHHFLLPIQSFEKIA 142
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.257e-17 Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2 Query: 8 GACGY-GNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCP 187 GACGY N Y T TAALST LF +G CG C+E++CV P WC PG S+ +T TN CP Sbjct: 72 GACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCP 133 HSP 2 Score: 39.2762 bits (90), Expect = 3.257e-17 Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFD++ P F ++A Sbjct: 143 GGWCNPPRHHFDMAPPSFLKLA 164
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.268e-17 Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNF 181 M GACGYGNLY + YG N AALST LFN+G SCG C+ I C P WC G +I VT TN+ Sbjct: 40 MGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY 102 HSP 2 Score: 34.6538 bits (78), Expect = 3.268e-17 Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCN + +FD+SQP +E I Sbjct: 103 GGWCNATRPYFDMSQPAWENI 123
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.211e-16 Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 2 Query: 8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFC 184 GACGYG+L YG TA +S ALF G +CG C+E++CVN WC GS + VTAT+FC Sbjct: 53 GACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFC 113 HSP 2 Score: 34.6538 bits (78), Expect = 1.211e-16 Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCN P++HF++S+ F ++A Sbjct: 124 GGWCNFPKEHFEMSEAAFLRVA 145
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14 Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 2 Query: 8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCP 187 GACGYG+L + + +A LS LFN G SCGAC E++CVN RWC G S+ VTAT+FCP Sbjct: 49 GACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCP 110 The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bpback to top |