CK937676

Overview
NameCK937676
Unique NameCK937676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  134 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            + SN +V+FSK+YC YC R K +  QL     VVELD   DG +IQ  L E+ G+RTVP VF+ GKHIGG D +    + G+L
Sbjct:   41 ILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQL 123          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  134 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            + SN + +FSKTYC Y  R K + + L  +  +VELD+  DG +IQ+ L +  G+ TVP VF+ G+H+GG D     H  G+L
Sbjct:   38 IYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQL 120          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  113 LNKAKEIVSSNPVVVFSKTYCGYC----TRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            +   K++++ N + V SKTYC YC      + E LK   +   V++L+   +G+ IQAAL E  GQRTVPN++I GKHIGG D + E  + G+L
Sbjct:    7 IKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGEL 100          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  125 KEIVSSNPVVVFSKTYCGYC-TRVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            K+++    V V +KTYC YC   +  L ++L    +   V+ELD  S+GS+IQ AL E +GQ+TVPNV+I GKHIGG   +    + GKL
Sbjct:   45 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 134          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  134 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 343
            V+ N VVVF+K+YC YC   ++++       +V ++D+ ++G +IQ+ L + TGQRTVPN+FI  KH+GG
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGG 81          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  107 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            IA    ++ +S+NPV VFSK++C +C   K  L +    +K  ELD   +GS IQA L E T Q TVP++F   + IGG   + +    G L
Sbjct:    4 IAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTL 95          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  119 KAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQR-TVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            +   + S   VV+F  + C  C  VK L  +LG S+ V E+D + +G  ++ ALA   G+   VP VFIGGK +G  D V+  H  GKLVP
Sbjct:    4 RVARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVP 94          
The following BLAST results are available for this feature:
BLAST of CK937676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GRXC3_ARATH4.559e-1649.40Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ2.955e-1542.17Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX1_YEAST1.621e-1342.55Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX2_YEAST3.993e-1244.44Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX1_SCHPO8.897e-1244.29Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX2_SCHPO7.531e-1139.13Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXC2_ORYSJ9.836e-1140.66Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004777_D07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937676 ID=CK937676; Name=CK937676; organism=Citrus sinensis; type=EST; length=662bp
GCGGGAGTGGTAANNNACAATACCAAACAACAAAGGAAAGGATCGAAAAC
TAAAATCAAGTCAAATGGGTTTATTTCAAAGCAAAATAAGCAAAGAAGAG
CTTGAAATCGCGCTTAACAAGGCCAAGGAAATCGTCTCCTCCAATCCCGT
CGTCGTCTTCAGCAAAACCTACTGTGGTTATTGTACAAGGGTGAAGGAGT
TGCTTAAACAGCTTGGAACGAGTTTCAAAGTCGTAGAATTGGATATTGAA
AGTGATGGAAGTAAAATTCAAGCAGCTCTGGCAGAGTGGACTGGGCAGAG
AACCGTACCCAATGTGTTCATTGGGGGAAAACACATCGGTGGCTGCGACA
CTGTAGTAGAGAAGCACCAAGGAGGAAAGCTGGTCCCCCTTCTTCGTGAT
GCCGGTGCCCTCGCCCTTGCTGACAAATGATAATTTTGCTCCGTTAAGAT
CAGAACCACAAGTTCGTGTACATGGGCTGAAGTGAAGAAATGCAACAATA
TTAAAGTGACCAATTATATGGTGTGTAAAAGTAACAATCGATGTCCACTT
TATTTGTGTGTGTGTGTGTGTGTTTTATAGACATTTCTCTGCTTGATTGT
AAAGTAAAATGAGAGATATGCATGCGTTGCTGCTCTCTGTATAAGGAGGG
AAGCATTCGACC
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