CK937618

Overview
NameCK937618
Unique NameCK937618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMD 88

HSP 2 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G K IP++ T+D R
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFMD  S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVS 91

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSI KT ENFRL+YD KGRF +H I +EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.877e-32
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMD 88

HSP 2 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDAR 145
[Close]
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3 
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMD
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMD 88

HSP 2 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDAR 145
The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4X_MOUSE1.676e-3276.1440S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU1.676e-3276.1440S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU1.676e-3276.1440S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN1.676e-3276.1440S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA1.676e-3276.1440S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE1.676e-3276.1440S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4X_MONDO2.859e-3275.0040S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4X_DANRE3.734e-3273.6340S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MACFU4.877e-3275.0040S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y1_PANTR6.369e-3275.0040S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bp
GGGGGCGGGAGTGGAGCTAGCATCGCTTGTNNNTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTG
CAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGAT
AAGACTTACCCTGCTGGGTTCATGGATGCGGGCTCAAAATCATACTTGTG
TTCATGATGATTCCTCCATTTCTGATATCATATTCCAAATTTAAGCCTCC
TTGATTTACTCTTTCTTTAAGAAGTTTTTTAAGATTTTTCACTTGTCCTT
TTGACTATCAGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGAC
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