CK937618
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31 Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV I MQR + VD KVRTD YP GFMD Sbjct: 1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMD 88 HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16 Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DVV+I KT E FRL+YD KGRF +H I +EEAK+KLCKVR VQ G KG+P++ T+DGR Sbjct: 88 DVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGR 145
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31 Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL REV AILMQR V VD KVRTD T+PAGFMD Sbjct: 1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMD 88 HSP 2 Score: 82.0333 bits (201), Expect = 3.176e-15 Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DV+ + KT ENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGR Sbjct: 88 DVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGR 145
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31 Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL EV I+MQR V VD KVRTD TYPAG+MD Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMD 88 HSP 2 Score: 78.9518 bits (193), Expect = 2.688e-14 Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DV+++ KT E FRL+YD KGRF +H I EEAK+KLCKV+ Q G KG+P++ T+DGR Sbjct: 88 DVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGR 145
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30 Identity = 64/88 (72.73%), Postives = 71/88 (80.68%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQ + +D KVR D TYPAGF+D Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFID 88 HSP 2 Score: 76.6406 bits (187), Expect = 1.334e-13 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DV+SI KT E+FRL+Y+TKG F +H I EEAK+KLCKVR + G KGIP++ T+D R Sbjct: 88 DVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDAR 145
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 M RG KKHLKRL AP HWML KL G +AP+PS+GPH RE LPL + LRNRL YAL REV AI+MQ+HV V KVRTD TYPAGFMD Sbjct: 1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMD 88 HSP 2 Score: 75.8702 bits (185), Expect = 2.276e-13 Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DV+++ TNE+FRL YD KG+F +H I EEA +KL KV+ VQ G+KG+PY+ T+DGR Sbjct: 88 DVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGR 145
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.374e-26 Identity = 60/86 (69.77%), Postives = 63/86 (73.26%), Query Frame = 3 Query: 120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E IL QR V VD KVRT +P GFMD Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMD 87 HSP 2 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DVV+I +TNE FR+LYDTKGR+ +H I+ EA FKLCKV+SV+ KG+P + T DGR Sbjct: 87 DVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGR 144
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23 Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 3 Query: 117 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMD 377 ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL + +V VD KVR DK YP G MD Sbjct: 1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMD 89 HSP 2 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DVV I KT+++FR+LYDTKGRF L S+ EEAK+KL KV + G IPYI T+D R Sbjct: 89 DVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 146
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22 Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 3 Query: 171 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +D KVRTD TYPAGFMD Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 69 HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16 Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 Query: 511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684 DV+SI KT ENFRL+YDTKGRF +H I EEAK+KLCKVR + G KGIP++ T+D R Sbjct: 69 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 126
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18 Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386 M G + HLKR APK WMLDK GG FA P+SGPHK EC+PL ++ L+YA ++E+ IL ++++ V+ +VRT+ +P G D S Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVS 91
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 3 Query: 120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386 +G K+HLKRL AP W + + +A +PS GPH + +PLI I+R+ L YA T RE IL + +LVD +VR D +P G MD S Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVS 92 The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bpback to top |