CK937618

Overview
NameCK937618
Unique NameCK937618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VD KVRTD  YP GFMD
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMD 88          

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVV+I KT E FRL+YD KGRF +H I +EEAK+KLCKVR VQ G KG+P++ T+DGR
Sbjct:   88 DVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VD KVRTD T+PAGFMD
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMD 88          

HSP 2 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+ + KT ENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGR
Sbjct:   88 DVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+MD
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMD 88          

HSP 2 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+++ KT E FRL+YD KGRF +H I  EEAK+KLCKV+  Q G KG+P++ T+DGR
Sbjct:   88 DVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 64/88 (72.73%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+D
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFID 88          

HSP 2 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT E+FRL+Y+TKG F +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   88 DVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDAR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFMD
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMD 88          

HSP 2 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+++  TNE+FRL YD KG+F +H I  EEA +KL KV+ VQ G+KG+PY+ T+DGR
Sbjct:   88 DVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.374e-26
Identity = 60/86 (69.77%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFMD
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMD 87          

HSP 2 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVV+I +TNE FR+LYDTKGR+ +H I+  EA FKLCKV+SV+   KG+P + T DGR
Sbjct:   87 DVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGR 144          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 3
Query:  117 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMD 377
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MD
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMD 89          

HSP 2 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVV I KT+++FR+LYDTKGRF L S+  EEAK+KL KV +   G   IPYI T+D R
Sbjct:   89 DVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 146          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 3
Query:  171 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMD
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 69          

HSP 2 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D R
Sbjct:   69 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDAR 126          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G  D  S
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVS 91          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MD  S
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVS 92          
The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4_LYSTE1.419e-3173.8640S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_YARLI3.161e-3175.0040S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_DROME4.128e-3175.0040S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN1.569e-3072.7340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL1.124e-2870.4540S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL1.374e-2669.7740S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH1.857e-2361.8040S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE2.682e-2273.9140S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU3.069e-1846.1540S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_PYRKO1.576e-1444.9430S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bp
GGGGGCGGGAGTGGAGCTAGCATCGCTTGTNNNTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTG
CAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGAT
AAGACTTACCCTGCTGGGTTCATGGATGCGGGCTCAAAATCATACTTGTG
TTCATGATGATTCCTCCATTTCTGATATCATATTCCAAATTTAAGCCTCC
TTGATTTACTCTTTCTTTAAGAAGTTTTTTAAGATTTTTCACTTGTCCTT
TTGACTATCAGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGAC
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