CK937618
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3 Query: 114 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 MAR G K+HLKRL AP W + + +A KP GPH E +PL++++R+ L YA T RE ++ + + VD +VR D +P G MD Sbjct: 1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMD 90
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386 +G K+HLKRL AP W L + F +P G H E LPL+LI+R+ LKYA RE I+ VLVD +VR ++ P G MD S Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVS 92
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 3 Query: 135 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 HL+R +P+ W +++ G ++ KPS GPH + +PL ++LR+ YA T RE I+ + +V VD KVR D YP G MD Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMD 83
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 3 Query: 114 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 MAR G ++ LK L AP+ W + + +A KP GPH + + LPL+LI+RN L YA T RE ++ + H VD VR D +P GFMD Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMD 89
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3 Query: 120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 +G +KHLKRL AP +W L + F +PS GPH + LPL+LI+R+ LK A RE I+ +L+D R + +P G MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3 Query: 120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 +G +KHLKRL AP +W L + F +PS GPH + LPL+LI+R+ LK A RE I+ +L+D R + +P G MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12 Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 3 Query: 123 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 G +KHLKR APK W + K + K S+GPH E +PL+++LR+ L A RE IL VLVD R + +P GFMD Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMD 89
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 3 Query: 123 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 G K+H+KRL AP W + K GG FAP+P GPH +PL++++R+ L YA RE I+ + + VD VR + +P G MD Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMD 92
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 3 Query: 129 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386 +KHLKR +P HW + + KPS GPH LPL++I+R+ LK A RE I+ VLVD + R + +P GFMD S Sbjct: 7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVS 92
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 3 Query: 135 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377 HL+R AP W + K GG + +PS GPH LPL LI+R+ LKYA T E I+ + +V VD VR D +P G MD Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMD 84 The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bpback to top |