CK937618

Overview
NameCK937618
Unique NameCK937618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  114 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VD +VR D  +P G MD
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMD 90          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G MD  S
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVS 92          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  135 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VD KVR D  YP G MD
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMD 83          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  114 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFMD
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMD 89          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  120 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  123 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFMD
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMD 89          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  123 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MD
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMD 92          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 3
Query:  129 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            +KHLKR  +P HW +      +  KPS GPH     LPL++I+R+ LK A   RE   I+    VLVD + R +  +P GFMD  S
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVS 92          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  135 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            HL+R  AP  W +  K GG +  +PS GPH     LPL LI+R+ LKYA T  E   I+ + +V VD  VR D  +P G MD
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMD 84          
The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4E_IGNH48.648e-1342.2230S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_METJA1.129e-1244.9430S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_CALMQ1.475e-1241.9830S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_AERPE1.475e-1244.9430S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_METVS1.927e-1241.8630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.927e-1241.8630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METST2.516e-1243.5330S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METKA9.562e-1241.8630S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_METTH1.631e-1141.8630S ribosomal protein S4e OS=Methanobacterium ther... [more]
RS4E_PYRAE4.745e-1145.1230S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bp
GGGGGCGGGAGTGGAGCTAGCATCGCTTGTNNNTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTG
CAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGAT
AAGACTTACCCTGCTGGGTTCATGGATGCGGGCTCAAAATCATACTTGTG
TTCATGATGATTCCTCCATTTCTGATATCATATTCCAAATTTAAGCCTCC
TTGATTTACTCTTTCTTTAAGAAGTTTTTTAAGATTTTTCACTTGTCCTT
TTGACTATCAGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGAC
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